DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh4 and OPN5

DIOPT Version :9

Sequence 1:NP_476701.1 Gene:Rh4 / 39887 FlyBaseID:FBgn0003250 Length:378 Species:Drosophila melanogaster
Sequence 2:XP_016865905.1 Gene:OPN5 / 221391 HGNCID:19992 Length:408 Species:Homo sapiens


Alignment Length:322 Identity:88/322 - (27%)
Similarity:147/322 - (45%) Gaps:37/322 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VPPDQIQYIPEHWLTQLEPPAS-----MHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSN 90
            :|.|  :.:| |:|...:|.||     ...:.|.:...:...||.|||.|:::.|..|....|:.
Human     8 LPQD--ERLP-HYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAE 69

  Fly    91 MFVLNLAVFDL-IMCLKAPIFIYNSFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDR--- 151
            :..:||||.|| |..:..|..|.:.|...:..|...|:.:...|.:.|.|:.:|..|:..||   
Human    70 IMTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLK 134

  Fly   152 -----YNVITKPMNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCSFDY--LS 209
                 |.|..|..:       |.|....||.|.:.|..:||....| :|||.:.|||:.|:  ..
Human   135 ICYLSYGVWLKRKH-------AYICLAAIWAYASFWTTMPLVGLGD-YVPEPFGTSCTLDWWLAQ 191

  Fly   210 DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNVDKSKETA 274
            .:...::|:..|.||..:.||.:|::.|.:|:..|.|..|.:.....:::          |....
Human   192 ASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIH----------SSHVL 246

  Fly   275 EIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDPFVYAI 336
            |:::.|.|:.||..|.::|.||.|:|:..|||....:....:::|....|..|..:|.:|.:
Human   247 EMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQV 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh4NP_476701.1 7tmA_photoreceptors_insect 55..345 CDD:320207 80/293 (27%)
TM helix 1 57..81 CDD:320207 7/23 (30%)
TM helix 2 90..111 CDD:320207 8/21 (38%)
TM helix 3 127..149 CDD:320207 5/21 (24%)
TM helix 4 170..186 CDD:320207 5/15 (33%)
TM helix 5 215..238 CDD:320207 7/22 (32%)
TM helix 6 279..301 CDD:320207 9/21 (43%)
TM helix 7 313..338 CDD:320207 5/24 (21%)
OPN5XP_016865905.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704940at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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