| Sequence 1: | NP_476701.1 | Gene: | Rh4 / 39887 | FlyBaseID: | FBgn0003250 | Length: | 378 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001364737.1 | Gene: | sro-1 / 191958 | WormBaseID: | WBGene00005641 | Length: | 380 | Species: | Caenorhabditis elegans |
| Alignment Length: | 265 | Identity: | 48/265 - (18%) |
|---|---|---|---|
| Similarity: | 90/265 - (33%) | Gaps: | 80/265 - (30%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 96 LAVFDLIMCLKAPIFIYNSFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKP-- 158
Fly 159 ----MNRN---MTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNFD--- 213
Fly 214 --TRLFVGTIFFFSFVCPTLMILY----------YYSQIVGHVFSHEKALREQAKKMNVESLRSN 266
Fly 267 VDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDP 331
Fly 332 FVYAI 336 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Rh4 | NP_476701.1 | 7tmA_photoreceptors_insect | 55..345 | CDD:320207 | 48/265 (18%) |
| TM helix 1 | 56..82 | CDD:320207 | |||
| TM helix 2 | 89..114 | CDD:320207 | 4/17 (24%) | ||
| TM helix 3 | 126..156 | CDD:320207 | 6/29 (21%) | ||
| TM helix 4 | 166..186 | CDD:320207 | 2/19 (11%) | ||
| TM helix 5 | 214..243 | CDD:320207 | 8/38 (21%) | ||
| TM helix 6 | 273..303 | CDD:320207 | 3/29 (10%) | ||
| TM helix 7 | 313..338 | CDD:320207 | 6/24 (25%) | ||
| sro-1 | NP_001364737.1 | 7tm_GPCRs | 10..300 | CDD:475119 | 48/265 (18%) |
| TM helix 1 | 10..31 | CDD:410628 | |||
| TM helix 3 | 82..104 | CDD:410628 | 1/21 (5%) | ||
| TM helix 4 | 126..142 | CDD:410628 | 3/23 (13%) | ||
| TM helix 5 | 170..205 | CDD:410628 | 4/36 (11%) | ||
| TM helix 6 | 240..262 | CDD:410628 | 7/37 (19%) | ||
| TM helix 7 | 274..297 | CDD:410628 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||