DRSC/TRiP Functional Genomics Resources

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Protein Alignment sina and AT2G41980

DIOPT Version :9

Sequence 1:NP_001287089.1 Gene:sina / 39884 FlyBaseID:FBgn0003410 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_181729.1 Gene:AT2G41980 / 818798 AraportID:AT2G41980 Length:305 Species:Arabidopsis thaliana


Alignment Length:328 Identity:97/328 - (29%)
Similarity:145/328 - (44%) Gaps:73/328 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 AAGAGATGV----------ATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL 70
            |..:.:|||          |.:..|.:||.|.|...|:|                     .:..|
plant    11 ALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGKFHSSN---------------------GVYEL 54

  Fly    71 FECPVCFDYVLPPILQCSSGHLVCVSCRSKL-TCCPTCRGPLANIRNLAMEKVASNVKFPCKHSG 134
            .|||||.:.:.|||.||.:||.:|.||:.:: ..|||||..|.|||.||:||||.:::.||::..
plant    55 LECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQN 119

  Fly   135 YGCTASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQG------- 192
            .||.....|..|.:||:.|..|.|.||..|:.|...|.:..::.||...|| :....|       
plant   120 LGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHK-VDMHDGCTFNHRY 183

  Fly   193 --------EDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQ-----QFFAIVQLI 244
                    |:..::.|..|            |||..|.|      .::..|     .:.|.::.:
plant   184 VKSNPHEVENATWMLTVFN------------CFGRQFCL------HFEAFQLGMAPVYMAFLRFM 230

  Fly   245 GSRKEAENFVYRLELNGNRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLF--ADNGNLGI 307
            |...||:.|.|.||:..:.|:|||:.:||||.:.......:.|.|:...::|..|  :|...|.:
plant   231 GDENEAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKL 295

  Fly   308 NVT 310
            .||
plant   296 RVT 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sinaNP_001287089.1 Sina 114..310 CDD:281181 60/217 (28%)
AT2G41980NP_181729.1 RING-HC_SIAHs 55..93 CDD:319485 18/37 (49%)
Sina 99..298 CDD:397316 60/217 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 106 1.000 Domainoid score I2183
eggNOG 1 0.900 - - E1_KOG3002
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 159 1.000 Inparanoid score I1644
OMA 1 1.010 - - QHG60089
OrthoDB 1 1.010 - - D780610at2759
OrthoFinder 1 1.000 - - FOG0001170
OrthoInspector 1 1.000 - - mtm1132
orthoMCL 1 0.900 - - OOG6_104798
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X796
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.740

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