DRSC/TRiP Functional Genomics Resources

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Protein Alignment sina and zftraf1

DIOPT Version :10

Sequence 1:NP_476725.1 Gene:sina / 39884 FlyBaseID:FBgn0003410 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_001070208.2 Gene:zftraf1 / 767773 ZFINID:ZDB-GENE-060929-720 Length:382 Species:Danio rerio


Alignment Length:187 Identity:48/187 - (25%)
Similarity:75/187 - (40%) Gaps:24/187 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSLFECPVCFD 78
            |..||.|:.|:| .....:|....|:...|:..:.....:....|....:...|.|:..|.||.|
Zfish    31 ALDAGPGSAGLA-GIQEESGVRRDGSVGEADPDAPPKKRVRLQEGEAGKLEERLYSVLCCTVCLD 94

  Fly    79 YVLPPILQCSSGHLVCVSC----------RSKLTCCPTCRGPLAN---IRNLAMEKVASNVKFPC 130
            .....:.||::|||:|..|          :.:...||.||..::.   .||||:||..|.:...|
Zfish    95 LPKASVYQCTNGHLMCAGCFIHLLADSRLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSEC 159

  Fly   131 KHSGYGCTASLVYTEKTEHE-ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKS 186
            .:    |......:....|: |.|:.|...|......|.||||.     |.:.:|::
Zfish   160 SY----CLKQFPRSGLDRHQTEECQDRVTQCKYKRIGCPWQGPF-----HELSAHEA 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sinaNP_476725.1 RING_Ubox 68..118 CDD:473075 18/62 (29%)
Sina 114..310 CDD:460824 21/74 (28%)
zftraf1NP_001070208.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..72 9/41 (22%)
RING-HC_CYHR1 78..139 CDD:438168 17/60 (28%)
Sina 144..>205 CDD:460824 20/69 (29%)
CYHR1_C 227..382 CDD:439370
Blue background indicates that the domain is not in the aligned region.

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