DRSC/TRiP Functional Genomics Resources

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Protein Alignment sina and SIAH1

DIOPT Version :9

Sequence 1:NP_001287089.1 Gene:sina / 39884 FlyBaseID:FBgn0003410 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_001006611.1 Gene:SIAH1 / 6477 HGNCID:10857 Length:313 Species:Homo sapiens


Alignment Length:306 Identity:219/306 - (71%)
Similarity:241/306 - (78%) Gaps:21/306 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSLFE 72
            ||:|.:...|.|..||.:....:....:..|.|:|.|                     ||.||||
Human    28 KRKEMSRQTATALPTGTSKCPPSQRVPALTGTTASNN---------------------DLASLFE 71

  Fly    73 CPVCFDYVLPPILQCSSGHLVCVSCRSKLTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGC 137
            |||||||||||||||.||||||.:||.||||||||||||.:||||||||||::|.||||::..||
Human    72 CPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGC 136

  Fly   138 TASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLATDI 202
            ..:|.:|||.:|||.||.|||.||||||||||||.||.||.|||..|||||||||||||||||||
Human   137 EITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDI 201

  Fly   203 NLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLT 267
            ||||||||||||||||.||||||||||||||||||||||||||:||:||||.|||||||:|||||
Human   202 NLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLT 266

  Fly   268 WEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFADNGNLGINVTISL 313
            |||.|||||||:|:||.||||||||||||||||:|||||||||||:
Human   267 WEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISM 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sinaNP_001287089.1 Sina 114..310 CDD:281181 163/195 (84%)
SIAH1NP_001006611.1 RING-HC_SIAH1 70..109 CDD:319665 34/38 (89%)
RING-HC finger (C3HC4-type) 72..106 CDD:319665 29/33 (88%)
Sina 113..309 CDD:367355 163/195 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 348 1.000 Domainoid score I1033
eggNOG 1 0.900 - - E1_KOG3002
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20654
Inparanoid 1 1.050 448 1.000 Inparanoid score I1626
Isobase 1 0.950 - 0 Normalized mean entropy S1969
OMA 1 1.010 - - QHG60089
OrthoDB 1 1.010 - - D780610at2759
OrthoFinder 1 1.000 - - FOG0001170
OrthoInspector 1 1.000 - - otm41613
orthoMCL 1 0.900 - - OOG6_104798
Panther 1 1.100 - - LDO PTHR45877
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2793
SonicParanoid 1 1.000 - - X796
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.820

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