DRSC/TRiP Functional Genomics Resources

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Protein Alignment sina and siah-1

DIOPT Version :9

Sequence 1:NP_001287089.1 Gene:sina / 39884 FlyBaseID:FBgn0003410 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_500409.1 Gene:siah-1 / 177138 WormBaseID:WBGene00021369 Length:419 Species:Caenorhabditis elegans


Alignment Length:313 Identity:195/313 - (62%)
Similarity:234/313 - (74%) Gaps:11/313 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSA-----GGGDA--GMSADLTS 69
            |.:|.:....|.|...|.....|:..|:... ||::::....|.|     |||.|  ..||::.|
 Worm    89 PPSAVSTISGTAVLGKTMARVQSNPPGSIPH-NTTTTAQGIQSVAPHIPIGGGGATDDSSAEILS 152

  Fly    70 LFECPVCFDYVLPPILQCSSGHLVCVSCRSKLTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSG 134
            :||||||.:|:|||.:|||||||||.:||.||.||||||||..::|||.:||:|:.|:||||.|.
 Worm   153 VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSVRNLGLEKIANTVRFPCKFST 217

  Fly   135 YGCTASLVYTEKTEHEETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLA 199
            .||..:..:.:||||||.||.|||.||||||||||||.|..||:||...||||||||||||||||
 Worm   218 SGCPLNFHHADKTEHEELCEFRPYCCPCPGASCKWQGGLSDVMEHLKKIHKSITTLQGEDIVFLA 282

  Fly   200 TDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYD---GHQQFFAIVQLIGSRKEAENFVYRLELNG 261
            ||||||||||||||||||.::||||||||||||   ..|.|:|:||||||:|||:||||||||:.
 Worm   283 TDINLPGAVDWVMMQSCFDYNFMLVLEKQEKYDPAQPTQMFYAVVQLIGSKKEADNFVYRLELSA 347

  Fly   262 NRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFADNGNLGINVTISLV 314
            :|||::|||.||||||||..||..||||.||::.|||||:|||||||||||.:
 Worm   348 SRRRMSWEATPRSIHEGVVVAIQQSDCLAFDSNAAQLFAENGNLGINVTISRI 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sinaNP_001287089.1 Sina 114..310 CDD:281181 142/198 (72%)
siah-1NP_500409.1 RING 155..194 CDD:238093 29/38 (76%)
Sina 197..396 CDD:281181 142/198 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 303 1.000 Domainoid score I759
eggNOG 1 0.900 - - E1_KOG3002
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20654
Inparanoid 1 1.050 396 1.000 Inparanoid score I1116
Isobase 1 0.950 - 0 Normalized mean entropy S1969
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001170
OrthoInspector 1 1.000 - - oto19493
orthoMCL 1 0.900 - - OOG6_104798
Panther 1 1.100 - - LDO PTHR45877
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2793
SonicParanoid 1 1.000 - - X796
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.800

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