DRSC/TRiP Functional Genomics Resources

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Protein Alignment nudC and nudcd3

DIOPT Version :9

Sequence 1:NP_001246805.1 Gene:nudC / 39879 FlyBaseID:FBgn0021768 Length:332 Species:Drosophila melanogaster
Sequence 2:XP_012814410.1 Gene:nudcd3 / 548495 XenbaseID:XB-GENE-982031 Length:375 Species:Xenopus tropicalis


Alignment Length:355 Identity:87/355 - (24%)
Similarity:178/355 - (50%) Gaps:53/355 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KFDNILLAVAEKHHGGVPEFLGTLASFLRRKTDFF-------------TGAKQTEWEKLLLDVFN 58
            ::|:.||.:.: |.|.:.:||.....||.|||||:             .||.|.    :::..|.
 Frog    37 RYDHALLGILQ-HVGNIQDFLNIYFGFLYRKTDFYRLLLNPQDRLGFPPGAAQA----MVMQTFK 96

  Fly    59 KESKLAVTENYEKIKAREASQRLKAEKERAERKARKQEIDDNKICDITDEEAAAIIKEEETKKRQ 123
            ...:||:.::.:::...:...:.|.||| |:.:|....:.: .|.:...|||.  :::::.::..
 Frog    97 TFERLALKDHEQRVCDLQEKLKKKEEKE-ADTEAAPPPVQE-VIIETPAEEAT--LEQDKAEEEP 157

  Fly   124 QLLDSAG-GEPSASNRD----GISKPIEKVDDESDKSELGKLMPNAGNGCTLENYTWTQTLEEVE 183
            |.:|:.| .|...::.|    ..::|.|:.|.::|        |::.||...:||.|:|...:||
 Frog   158 QQIDTKGRAEGRETSEDCAGQAAAEPKEQEDYQAD--------PDSYNGAIRKNYVWSQDYTDVE 214

  Fly   184 LKIPFNLTFGLRARDLVISIGKKSLKVGIK---GQTPIIDGELCGEVKTEESVWVLQDSKTVMIT 245
            :|:|...:. ::.|.:.:.:....::|.::   |:..:::|....::..|.|:|.|:..|.::|:
 Frog   215 IKVPVPKSV-IKGRQVSVDLRSSCIRVAVREGGGERVLVEGSFTHKINAETSLWSLEPGKCIVIS 278

  Fly   246 LDKINKMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKELGLPTSEDRKK 310
            |.|..:: ||:.::..:.:|...|||.|.| ::.:|.|..::::::.:|..||..|.|.|.:.|.
 Frog   279 LSKCGEV-WWNAVLEDEEKIDIDKINKERS-MATVDDEEHAVLDRLTFDYHQKLQGKPQSHELKV 341

  Fly   311 QDILEK--------FKQQHPEMDFSKCKFN 332
            .::|:|        ||.|    :|....||
 Frog   342 HEMLKKGWDAEGSPFKGQ----NFDPSMFN 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nudCNP_001246805.1 Nudc_N 7..58 CDD:290757 17/63 (27%)
p23_mNUDC_like 173..259 CDD:107241 21/88 (24%)
nudcd3XP_012814410.1 Nudc_N 37..96 CDD:372893 17/63 (27%)
p23_NUDCD3_like 198..299 CDD:107244 24/102 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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