DRSC/TRiP Functional Genomics Resources

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Protein Alignment nudC and nudc

DIOPT Version :9

Sequence 1:NP_001246805.1 Gene:nudC / 39879 FlyBaseID:FBgn0021768 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001240718.1 Gene:nudc / 100380054 XenbaseID:XB-GENE-985468 Length:329 Species:Xenopus tropicalis


Alignment Length:337 Identity:173/337 - (51%)
Similarity:236/337 - (70%) Gaps:13/337 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAA--EEGKFDNILLAVAEKHHGGVPEFLGTLASFLRRKTDFFTGAKQTEWEKLLLDVFNKESKL 63
            |||  |:.:||.:|||:|::|.|||.|.:.|..||||||||||.|.:....|||:...||..:||
 Frog     1 MAASGEDERFDAMLLAMAQQHEGGVQELVNTFFSFLRRKTDFFVGGENAAAEKLITQAFNHHNKL 65

  Fly    64 AVTENYEKIKAREASQRLKAEKERAERKARKQEID--DNKICDITDEEAAAIIKEEETKKRQQLL 126
            |:....:|     .:.||:.|..|.||:|:|:|.:  :::|.::|||||..:.||.:..|.::..
 Frog    66 ALAAQKQK-----DADRLEREAVRQEREAKKKETEAGESRITELTDEEAERLQKEIDKNKEKEKA 125

  Fly   127 DSAGGEPSASNRDG-ISKPIEKVDDESDKSELGKLMPNAGNGCTLENYTWTQTLEEVELKIPFNL 190
            .....|.....:|| ..|..|:.|||.||   |||.||:|||..|.:|.|||||.||:|.:||.:
 Frog   126 TRETEEKPEPEKDGEEEKEEEEEDDEKDK---GKLKPNSGNGANLPHYRWTQTLSEVDLVVPFPV 187

  Fly   191 TFGLRARDLVISIGKKSLKVGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKINKMNWW 255
            :|.|:.:|:.:.|.:..|.:|::||.|::||||..::|.||..|:::|.|.|.:.|:|||.|.||
 Frog   188 SFRLKGKDVQVDIKRHRLTIGLRGQKPVLDGELFNDIKVEECSWLIEDGKVVTVHLEKINTMEWW 252

  Fly   256 SRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKELGLPTSEDRKKQDILEKFKQQ 320
            ||:|.|||||:|:|||||:||||||||||||||||||||||||.:|||||:::||||||:||.:|
 Frog   253 SRVVLTDPEINTKKINPENSKLSDLDGETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQ 317

  Fly   321 HPEMDFSKCKFN 332
            ||||||||.||:
 Frog   318 HPEMDFSKAKFS 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nudCNP_001246805.1 Nudc_N 7..58 CDD:290757 26/50 (52%)
p23_mNUDC_like 173..259 CDD:107241 40/85 (47%)
nudcNP_001240718.1 Nudc_N 9..60 CDD:372893 26/50 (52%)
NuDC 95..>124 CDD:374462 9/28 (32%)
p23_mNUDC_like 170..256 CDD:107241 40/85 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 147 1.000 Domainoid score I4486
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4812
Inparanoid 1 1.050 339 1.000 Inparanoid score I2324
OMA 1 1.010 - - QHG56463
OrthoDB 1 1.010 - - D1474731at2759
OrthoFinder 1 1.000 - - FOG0003931
OrthoInspector 1 1.000 - - oto104108
Panther 1 1.100 - - LDO PTHR12356
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R854
SonicParanoid 1 1.000 - - X2707
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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