DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9705 and Lin28a

DIOPT Version :9

Sequence 1:NP_001261972.1 Gene:CG9705 / 39875 FlyBaseID:FBgn0036661 Length:143 Species:Drosophila melanogaster
Sequence 2:NP_665832.1 Gene:Lin28a / 83557 MGIID:1890546 Length:209 Species:Mus musculus


Alignment Length:66 Identity:22/66 - (33%)
Similarity:29/66 - (43%) Gaps:19/66 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 SARALENPVV---TGMVKSFSRTKGHGFI--TPNAG-----GEDVFCHVSDI---------EGEY 91
            :|||.:.|.:   .|:.|.|:...|.||:  |..||     ..|||.|.|.:         |||.
Mouse    28 AARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEA 92

  Fly    92 V 92
            |
Mouse    93 V 93

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9705NP_001261972.1 CSP_CDS 55..120 CDD:239905 18/57 (32%)
Lin28aNP_665832.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 1/2 (50%)
CSP_CDS 42..111 CDD:239905 18/52 (35%)
Flexible linker 113..136
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..209
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1278
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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