DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9705 and lin-28

DIOPT Version :10

Sequence 1:NP_648920.1 Gene:CG9705 / 39875 FlyBaseID:FBgn0036661 Length:143 Species:Drosophila melanogaster
Sequence 2:XP_316618.3 Gene:lin-28 / 1277174 VectorBaseID:AGAMI1_012541 Length:182 Species:Anopheles gambiae


Alignment Length:474 Identity:90/474 - (18%)
Similarity:156/474 - (32%) Gaps:146/474 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 QQPKKRRRKESAKPC----GDVVDVSRKRAKMAKTAGGKDQSASPGP----SSKKISNDSKTVQD 234
            :.|::...:|.|...    ||.||    ..:.|:..||.....|||.    :|.:.::..||.: 
Mosquito    76 KSPQRNAFQEDAYQANLAGGDSVD----NIESAQLDGGNPSGGSPGQRHSINSAEYTSTPKTTR- 135

  Fly   235 SFSPLKAQNGNDSLVLENVKHTDKANHQPMNATSPKSKAAGSSGPLHPKCSSKSVHEQSNSPPGK 299
                 ...||:.         |......|:|...|     |...|...:..|:.:..|...   :
Mosquito   136 -----SGPNGST---------TASGTTSPINYQLP-----GDDYPYGIEYESQQLLYQQQQ---Q 178

  Fly   300 SRPNVSAKSAVVRQQVNNGMPDLDIATESKT---SIQISKKS------------------GSNGR 343
            .:...|.:....:||....:|..|:...|..   |:.:|::|                  |::.|
Mosquito   179 QQQQQSQQQQQQQQQQQQQLPVGDVEQSSAVTYQSLPVSRQSYASPPALIIPQRQSLLPWGAHSR 243

  Fly   344 -------PKYSTLEKAIRNLEKLVAESRPPAATE----NQDADISSQAVKRGLPGDVKLHLA--- 394
                   |.|:..|...........|:..|...|    |..:|.::||.|       |:.|.   
Mosquito   244 SSIINVLPSYTQAEMHALAARVASVETSAPRPGEIVMRNLFSDFTAQAEK-------KIELVMLE 301

  Fly   395 ----KVARIAYASQGEISGELINRLMGIVGHLIQIRSLKRNLKIMIDSIVTANREKDTRFQRIKS 455
                .::::....:.:...:|::.|..:..|.         |..::.:::..:|.     |....
Mosquito   302 SADKNLSKLLQRGEDQQFDQLLSALGSVAEHC---------LPSLLHTLLAWHRR-----QLSDM 352

  Fly   456 EITEMLKTQVPLVESQETNQEAGTSD-DFQDVGSLGKSPVKKFVMDVALEEKLCDLYDVFVEGMD 519
            ||...||...|...|.:......|.| |||   ...:....:|:..:||.|        .::.:.
Mosquito   353 EIKNDLKKPAPSGSSSQAATNKPTVDLDFQ---LQRREAAVEFIFCLALIE--------ILKQLP 406

  Fly   520 EHSGSQ--IRKL---------YSDLAQLWPNSLVDNHEI--------------------RRAICR 553
            .|.|.:  :|.:         |.|..|..||:| :.|.|                    :|.:..
Mosquito   407 YHPGHEDLVRSIENLAFKHFKYKDGLQNNPNAL-NIHMIADLYAEVIGVLAQSRFASVRKRFMSE 470

  Fly   554 EKERRRALEGNIGKEMDQT 572
            .||.|       |||:..|
Mosquito   471 LKELR-------GKEVSPT 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9705NP_648920.1 CSP_CDS 55..120 CDD:239905
lin-28XP_316618.3 CSD 42..107 CDD:278729 8/34 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.