DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9701 and Lct

DIOPT Version :9

Sequence 1:NP_648918.1 Gene:CG9701 / 39872 FlyBaseID:FBgn0036659 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_446293.1 Gene:Lct / 116569 RGDID:620823 Length:1929 Species:Rattus norvegicus


Alignment Length:514 Identity:230/514 - (44%)
Similarity:310/514 - (60%) Gaps:18/514 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 FPNDFLWGVGSSSYQIEGGWNADDKGESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKRDVQMVK 90
            ||..|:|...|:|||:||.|.||.||.||||..:|| |.:|.:..||||:.||||:...||..::
  Rat  1379 FPKGFIWSAASASYQVEGAWRADGKGLSIWDTFSHT-PLRIGNDDNGDVACDSYHKIAEDVVALQ 1442

  Fly    91 ELHVGTYRFSLSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHWELPQKLQELGG 155
            .|.|..||||::|.||:|.|....::.||:.||...||.||...|||.||||||:|||.||::||
  Rat  1443 NLGVSHYRFSIAWSRILPDGTTKFINEAGLSYYVRFIDALLAAGITPQVTIYHWDLPQALQDVGG 1507

  Fly   156 WTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNEPWHVCEHGYGVDYMAPSYNY-PGIPAYLCGHN 219
            |.|..|:..||:||.::.:..|||||.|.|:|||:.:...|||....||..:: ||...|:.|||
  Rat  1508 WENETIVQRFKEYADVLFQRLGDRVKFWITLNEPFVIAAQGYGTGVSAPGISFRPGTAPYIAGHN 1572

  Fly   220 LLKAHAEVVHMYRELFQPRQGGRMGITLDTSWPEPRDPNSAEDREASERAMQFYVGWFGHPIFSK 284
            |:|||||..|:|.::::.||||.:.||:.:.|.|||||.:..|.||:.|.:||..|||.|||| |
  Rat  1573 LIKAHAEAWHLYNDVYRARQGGTISITISSDWAEPRDPTNQGDVEAARRYVQFMGGWFAHPIF-K 1636

  Fly   285 HGNYPKVMIERIRNLSKEQGFGARSRLPEFTTEEIHRIRGTSDFFGINSYTSNLVTSNGHNNTGK 349
            :|:||:||..|||:.|...|.. :|||||||..|..||:||.||||.|.||:.|    .:|....
  Rat  1637 NGDYPEVMKTRIRDRSLAAGLN-KSRLPEFTESEKSRIKGTFDFFGFNHYTTVL----AYNLDYP 1696

  Fly   350 FPVPSFNHDMGVVESQEGVDWPGSGSVWLKVYPKGMYNLLMWIHREYNAPEIIVTENGVSDRG-- 412
            ....||:.|.||....:. .||.|||.||||.|.|...:|.|:..|||.|.|.|||||||.||  
  Rat  1697 AAFSSFDADRGVASIADS-SWPVSGSFWLKVTPFGFRRILNWLKEEYNNPPIYVTENGVSRRGEP 1760

  Fly   413 GLEDYARVDYYNLYLSAVLDAMEDGANISGYIAWSLMDSYEWKAGFSEKFGLYHVDFNSPQRTRT 477
            .|.|..|:.|...|::..|.|::|..::.||..||:||::||..||:|:||::.|:.:.|...|.
  Rat  1761 ELNDTDRIYYLRSYINEALKAVQDKVDLRGYTVWSIMDNFEWATGFAERFGVHFVNRSDPSLPRI 1825

  Fly   478 PKISARVFAQLCKTNTIDWSYRPKLDEEQQLVAMAQLPAEARTSGASGAVSWSLMGILL 536
            ||.||:.:|.:.:.|...       |..|......|.|.:|..:.:........:|::|
  Rat  1826 PKASAKFYATIVRCNGFP-------DPAQGPHPCLQQPEDAAPTASPVQSEVPFLGLML 1877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9701NP_648918.1 Glyco_hydro_1 22..492 CDD:304882 222/468 (47%)
LctNP_446293.1 Glyco_hydro_1 86..>224 CDD:304882
Glyco_hydro_1 380..849 CDD:304882
Glyco_hydro_1 902..1366 CDD:278653
Glyco_hydro_1 1375..1842 CDD:278653 223/470 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350791
Domainoid 1 1.000 441 1.000 Domainoid score I526
eggNOG 1 0.900 - - E1_COG2723
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D257823at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44538
orthoMCL 1 0.900 - - OOG6_100193
Panther 1 1.100 - - O PTHR10353
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X89
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.750

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