DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SB1 and PGRP-LF

DIOPT Version :10

Sequence 1:NP_648917.1 Gene:PGRP-SB1 / 39870 FlyBaseID:FBgn0043578 Length:190 Species:Drosophila melanogaster
Sequence 2:NP_648299.3 Gene:PGRP-LF / 39064 FlyBaseID:FBgn0035977 Length:369 Species:Drosophila melanogaster


Alignment Length:189 Identity:61/189 - (32%)
Similarity:96/189 - (50%) Gaps:6/189 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ISFVAALVLCCLALSANA----LQIEPRSSW-GAVSARSPSRISGAVDYVIIHHSDNPNGCSTSE 66
            :...|...:..::.|.::    |.|..||.| |...:.....:...|..:||||:.. .||...:
  Fly    35 VGLAAGYFMWMMSFSTHSPNKGLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTAT-EGCEQED 98

  Fly    67 QCKRMIKNIQSDHKGRRNFSDIGYNFIVAGDGKVYEGRGFGLQGSHSPNYNRKSIGIVFIGNFER 131
            .|...:|.||:.|.....:.||||||:|.|||::|.|||:.:||.|...|...|:.|.|||.|..
  Fly    99 VCIYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGAISVSIAFIGTFVN 163

  Fly   132 SAPSAQMLQNAKDLIELAKQRGYLKDNYTLFGHRQTKATSCPGDALYNEIKTWPHWRQN 190
            ..|.|:.::.||.|::...:...|:.:|.::.|||...|..||..|:..::.||.:.|:
  Fly   164 MEPPARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLSPTESPGQKLFELMQNWPRFTQD 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SB1NP_648917.1 PGRP 25..167 CDD:128941 51/142 (36%)
PGRP-LFNP_648299.3 PGRP 57..199 CDD:128941 51/142 (36%)
PGRP 236..363 CDD:470657
Blue background indicates that the domain is not in the aligned region.

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