DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SB1 and PGRP-SC1b

DIOPT Version :10

Sequence 1:NP_648917.1 Gene:PGRP-SB1 / 39870 FlyBaseID:FBgn0043578 Length:190 Species:Drosophila melanogaster
Sequence 2:NP_610409.1 Gene:PGRP-SC1b / 35861 FlyBaseID:FBgn0033327 Length:185 Species:Drosophila melanogaster


Alignment Length:152 Identity:33/152 - (21%)
Similarity:55/152 - (36%) Gaps:46/152 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPD--VQFL----------- 54
            |..:||.|||.:.:. |.|:.           |.|  |:.:..:|:.|  :|.|           
  Fly  1126 EYCNAQSLVDQVIDV-DNLIT-----------KLL--KVLRIVQMDNDHCIQELINHKNKLAISN 1176

  Fly    55 ---QVNYEEHKSMCYSL------GVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDR 110
               |...:|::.:.|.|      ..|.|.    .|||:     .:.....:.|.|..:.|...|.
  Fly  1177 EEIQDRVKEYEELNYKLQDDLKDAYHQLQ----VRGSE-----LNSNKVELLKHRQEIDKLNEDI 1232

  Fly   111 CSLGPTKGLEEKELVALAANKE 132
            |.|. |...:.|:...:..::|
  Fly  1233 CQLS-TLCSDSKQAKKIVIDRE 1253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SB1NP_648917.1 PGRP 25..167 CDD:128941 25/130 (19%)
PGRP-SC1bNP_610409.1 PGRP 22..163 CDD:128941
Blue background indicates that the domain is not in the aligned region.

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