DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SB1 and PGRP-LE

DIOPT Version :9

Sequence 1:NP_648917.1 Gene:PGRP-SB1 / 39870 FlyBaseID:FBgn0043578 Length:190 Species:Drosophila melanogaster
Sequence 2:NP_001245695.1 Gene:PGRP-LE / 32534 FlyBaseID:FBgn0030695 Length:345 Species:Drosophila melanogaster


Alignment Length:172 Identity:68/172 - (39%)
Similarity:97/172 - (56%) Gaps:12/172 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LSANALQIEPRSSWGAVSAR-SPSRISGAVDYVIIHHSDNPNGCSTSEQCK---RMIKNIQSDHK 80
            |||    |.|||||.|.... .|..:...|.||:|.|:    ...:||:..   |:|:::|..|.
  Fly   174 LSA----IIPRSSWLAQKPMDEPLPLQLPVKYVVILHT----ATESSEKRAINVRLIRDMQCFHI 230

  Fly    81 GRRNFSDIGYNFIVAGDGKVYEGRGFGLQGSHSPNYNRKSIGIVFIGNFERSAPSAQMLQNAKDL 145
            ..|.::||.|||:|..||.:|||||:...|:|:..|||.|:||.|||.|.:..|:|..|...::|
  Fly   231 ESRGWNDIAYNFLVGCDGNIYEGRGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNL 295

  Fly   146 IELAKQRGYLKDNYTLFGHRQTKATSCPGDALYNEIKTWPHW 187
            :....:.|::..:|.|..|.|..:|..||..||.||:||||:
  Fly   296 LARGVEDGHISTDYRLICHCQCNSTESPGRRLYEEIQTWPHF 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SB1NP_648917.1 PGRP 25..167 CDD:128941 53/145 (37%)
PGRP-LENP_001245695.1 PGRP 175..317 CDD:128941 55/149 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440268
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110472at2759
OrthoFinder 1 1.000 - - FOG0000842
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11022
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.950

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