DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SB2 and Pglyrp1

DIOPT Version :10

Sequence 1:NP_001261970.1 Gene:PGRP-SB2 / 39869 FlyBaseID:FBgn0043577 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_445825.1 Gene:Pglyrp1 / 84387 RGDID:621429 Length:183 Species:Rattus norvegicus


Alignment Length:141 Identity:52/141 - (36%)
Similarity:75/141 - (53%) Gaps:12/141 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LCGLTLALGQIVPRSSWCPVPISPRMPRLMVPVRLIIIHHTVTAPCFNPHQCQLVLRQIRADHMR 73
            |.||..:...:||||.|..:| |.....|..|||.::|.||..:.|.:|..|:...|.::...|:
  Rat    11 LLGLADSCCFVVPRSEWKALP-SECSKGLKKPVRYVVISHTAGSFCSSPDSCEQQARNVQLYQMK 74

  Fly    74 R-KFRDIGYNFLIGGDGRIYEGLGFGIRGEH-APRYNSQSIGIAFIGNFQNAPGCPNPHPNR--- 133
            : .:.|:.||||||.||.:|||.|:.|:|:| .|.:|..||||.|:|::.:.  .|.....|   
  Rat    75 QLGWCDVAYNFLIGEDGHVYEGRGWTIKGDHTGPIWNPMSIGITFMGDYSHR--VPAKRALRAAL 137

  Fly   134 ----CAASPGF 140
                |..|.||
  Rat   138 NLLKCGVSEGF 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SB2NP_001261970.1 PGRP 18..>129 CDD:128941 44/112 (39%)
Pglyrp1NP_445825.1 PGRP 21..161 CDD:128941 49/131 (37%)

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