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Protein Alignment PGRP-SB2 and PGRP-LB
DIOPT Version :9
Sequence 1: | NP_001261970.1 |
Gene: | PGRP-SB2 / 39869 |
FlyBaseID: | FBgn0043577 |
Length: | 191 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001247052.1 |
Gene: | PGRP-LB / 41379 |
FlyBaseID: | FBgn0037906 |
Length: | 255 |
Species: | Drosophila melanogaster |
Alignment Length: | 135 |
Identity: | 48/135 - (35%) |
Similarity: | 73/135 - (54%) |
Gaps: | 23/135 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 QLALVLCGLT-----------LALGQIVPRSSWCPVPISPRMPR----LMVPVRLIIIHHT-VTA 52
||| ..||.: :|..:::.||.| ..|:|: ...|...:||||: :.|
Fly 30 QLA-TSCGYSQHMQQANLGDGVATARLLSRSDW-----GARLPKSVEHFQGPAPYVIIHHSYMPA 88
Fly 53 PCFNPHQCQLVLRQIRADH-MRRKFRDIGYNFLIGGDGRIYEGLGFGIRGEHAPRYNSQSIGIAF 116
.|::...|...:|.::..| :.|.:.||||:|.|||||.||.|.||.:.|.|||:||.:|:||..
Fly 89 VCYSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIGGDGMIYTGRGFNVIGAHAPKYNDKSVGIVL 153
Fly 117 IGNFQ 121
||:::
Fly 154 IGDWR 158
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-SB2 | NP_001261970.1 |
PGRP |
18..>129 |
CDD:128941 |
42/110 (38%) |
PGRP-LB | NP_001247052.1 |
PGRP |
53..195 |
CDD:128941 |
42/111 (38%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
1 |
0.950 |
- |
0 |
Normalized mean entropy |
S7130 |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1110472at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000842 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
otm26632 |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
P |
PTHR11022 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
6 | 5.970 |
|
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