DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SB2 and Pglyrp4

DIOPT Version :9

Sequence 1:NP_001261970.1 Gene:PGRP-SB2 / 39869 FlyBaseID:FBgn0043577 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_001159440.1 Gene:Pglyrp4 / 384997 MGIID:2686324 Length:375 Species:Mus musculus


Alignment Length:179 Identity:59/179 - (32%)
Similarity:79/179 - (44%) Gaps:44/179 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ALGQIVPRSSW------CPVPISPRMPRLMVPVRLIIIHHTVTAPCFNPHQCQLVLRQIRADHMR 73
            |...|||||.|      |        .|:.:|.:..||.||....|..|.:|:|::|.:::..|.
Mouse   211 ACPHIVPRSVWGARDSHC--------SRMTLPAKYAIILHTAGRTCSQPDECRLLVRDLQSFFMN 267

  Fly    74 R-KFRDIGYNFLIGGDGRIYEGLGFGIRGEHAPRYNSQSIGIAFIGNFQNAPGCPNPHPN----- 132
            | ...|||||||:|.||.:|||:|:..:|.....||..|:.|.|:|.|..:|      ||     
Mouse   268 RLNACDIGYNFLVGQDGGVYEGVGWNNQGSKTDSYNDISLSITFMGTFTGSP------PNAAALE 326

  Fly   133 ------RCAASPGFAQLFRGGSLPN---EGHCLSGNT--PSQRAQKVAK 170
                  |||...|:.       .||   .||....||  |.|....:.|
Mouse   327 AAQDLIRCAVVKGYL-------TPNYLLMGHSDVSNTLSPGQALYNIIK 368

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
PGRP-SB2NP_001261970.1 PGRP 18..>129 CDD:128941 43/117 (37%)
Pglyrp4NP_001159440.1 PGRP 58..192 CDD:128941
PGRP 213..353 CDD:128941 53/160 (33%)
Interaction with murein. /evidence=ECO:0000250 295..304 2/8 (25%)