DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dab and C8b

DIOPT Version :9

Sequence 1:NP_001163455.2 Gene:Dab / 39866 FlyBaseID:FBgn0000414 Length:2360 Species:Drosophila melanogaster
Sequence 2:NP_598643.1 Gene:C8b / 110382 MGIID:88236 Length:589 Species:Mus musculus


Alignment Length:607 Identity:104/607 - (17%)
Similarity:186/607 - (30%) Gaps:196/607 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1801 AVVGPQRLRKSSGSSPWDGEEPALPGQKSWKRPASAAETERRLAESRRAVALGQTPSDGE----- 1860
            |.:|......|.|..|...|..|:.|.....||.             |:||....|.|.|     
Mouse    19 ATLGCLHFPGSRGGKPDFFETKAVNGSLVKSRPV-------------RSVAEAPAPIDCELSTWS 70

  Fly  1861 --------KERRFRKKTRARSAK------DLATVGAPSASTSAPSRSSY----------GRGIRD 1901
                    :::|:|.....|.::      ||:........|:.|.||..          ||.:  
Mouse    71 SWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCRSQVRCEGFVCAQTGRCV-- 133

  Fly  1902 NYDYICPGQRNDDDDDDDEDYVDDEPPTDEDKFERLNRRRHEMHQRMLESERRQMERHQPPSLAK 1966
            |...:|.|. ||..|..||                .|.|      |:.::.:|:||::.  ::.:
Mouse   134 NRRLLCNGD-NDCGDQSDE----------------ANCR------RIYKNCQREMEQYW--AIDR 173

  Fly  1967 LPGQNRTRGVVANSDYGFVDSYEQTPTPTPRSNASSTGPGGLMMSGGESSAGVTSSKFNFDDGFE 2031
            |          |:....|.:::|              ||    :......||..|..:..|..|.
Mouse   174 L----------ASGINLFTNTFE--------------GP----VLDHRYYAGGCSPHYILDTNFR 210

  Fly  2032 SDFNQSSPPPAPAGTASSCNSTPAGPVSANANNGGSKSLFRFSNDFSDREKREQFEMDTPPTSTP 2096
            ..:|..|..|.                        :|..:.|:  .::.|....||         
Mouse   211 KPYNVESYTPQ------------------------TKCEYEFT--LTEYESYSDFE--------- 240

  Fly  2097 PITQKLRFDDNVKVSQFDDAAFEDDFAKASFDFEKEQAGSATAGAGGSGAMSRKQNM--RTSKLQ 2159
                :|..:....:..|......|.........|..:         |...::|.:..  ..||..
Mouse   241 ----RLVIEKKTHMFNFTSGFKVDGVMDLGIKVESNE---------GKNYVTRTKRFAHTQSKFL 292

  Fly  2160 QRQELIK------KSESVNIFAKKQEDPFEDDEFFKSPDQEQAMDQHND---------DTE---G 2206
            ..:.:::      ||.|:.:.       :|..:..||...|.:..::.|         .||   |
Mouse   293 HARSVLEVAHYKLKSRSLMLH-------YEFLQRVKSLPLEYSYGEYRDLLRDFGTHFITEAVLG 350

  Fly  2207 GKFQWSEDANFAKFDE-NMXFDQLFAKASGQRPDPDIDNHNYAEIDVVNDTDFSFLANLNHYYQQ 2270
            |.::::...|....:: :. ...:.|.|.|......:....|.::.|........:..:|...::
Mouse   351 GIYEYTLIMNKDAMEQGDYTLSHVTACAGGSFGIGGMVYKVYVKVGVSAKKCSDIMKEINERNKR 415

  Fly  2271 QRL---------HSLRQSLNRHVYCNLPVQQLQEQVNQPMKKSIATSTSPWHEPKVKSKPLQQLL 2326
            ..:         ....:.:....|..||..:|.|.....:|.:.|..       |:|::||.:|:
Mouse   416 STMVEDLVVLVRGGTSEDITALAYKELPTPELMEAWGDAVKYNPAII-------KIKAEPLYELV 473

  Fly  2327 -------RKPKKWKLKRTLDDF 2341
                   ....|..||:.|::|
Mouse   474 TATDFAYSSTVKQNLKKALEEF 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DabNP_001163455.2 PTB_Dab 35..181 CDD:269926
C8bNP_598643.1 TSP1 67..115 CDD:214559 6/47 (13%)
Ldl_recept_a 119..154 CDD:278486 10/53 (19%)
MACPF 291..496 CDD:214671 36/219 (16%)
TSP1 547..589 CDD:214559
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 570..589
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3535
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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