DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lasp and PLIM2b

DIOPT Version :10

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_171683.1 Gene:PLIM2b / 839267 AraportID:AT1G01780 Length:205 Species:Arabidopsis thaliana


Alignment Length:225 Identity:50/225 - (22%)
Similarity:78/225 - (34%) Gaps:51/225 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CARCQKVVYPIEELKCLDKTWHKTCFKCTECGMTLNMKTYKGYNKMPYCEAHIPKAKATAIADTP 69
            |..|.|.||.::.|......:||:||:||.|..||.|..|...:.:.||:.|..:.         
plant    10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQL--------- 65

  Fly    70 ELKRIAENTKIQSNVKYHADFEKAKGKFTQVADDPETLRIKQNTKHISNVAYHGDLEKKAAMEKQ 134
                      .:.:..:..:|:..|      .:.||..|   ....||:: :.|..:|.||.|| 
plant    66 ----------FKESGNFSKNFQPGK------TEKPELTR---TPSKISSI-FCGTQDKCAACEK- 109

  Fly   135 RGSAEVSDSSNESEYFSEQLAAEQFSQYAPTASPIPPAATTLHQQQQQLQHQQQQQYQQHQQQLQ 199
                        :.|..|::..|....:...........|..|.....|  ......:.|..||.
plant   110 ------------TVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASL--DSVLYCRHHFNQLF 160

  Fly   200 QQQHQHQHYLQQQQ-------QTLPPPPIQ 222
            .::..:.|.||...       .||||.|.:
plant   161 MEKGNYAHVLQAANHRRTASGNTLPPEPTE 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 19/51 (37%)
Nebulin 67..94 CDD:459977 1/26 (4%)
NEBU 97..127 CDD:128523 6/29 (21%)
SH3_Nebulin_family_C 600..654 CDD:212723
PLIM2bNP_171683.1 LIM1_SF3 6..68 CDD:188824 20/76 (26%)
LIM 104..164 CDD:413332 13/74 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.