DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lasp and WLIM1

DIOPT Version :10

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_172491.1 Gene:WLIM1 / 837558 AraportID:AT1G10200 Length:190 Species:Arabidopsis thaliana


Alignment Length:155 Identity:39/155 - (25%)
Similarity:64/155 - (41%) Gaps:31/155 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CARCQKVVYPIEELKCLDKTWHKTCFKCTECGMTLNMKTYKGYNKMPYCEAHIPK-AKAT----- 63
            |..|.|.||.:::|...::.:||.||:|..|..||.:..|..:..:.||..|..: .|.|     
plant    10 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNFKRTGSLEK 74

  Fly    64 AIADTPEL---------KRIAENTKIQSNVKYHADFEKAKGKFTQVADDPETLRIKQNTKHISNV 119
            :...||::         :|.| .||: ||: :....||..|             ..:....|..|
plant    75 SFEGTPKIGKPDRPLEGERPA-GTKV-SNM-FGGTREKCVG-------------CDKTVYPIEKV 123

  Fly   120 AYHGDLEKKAAMEKQRGSAEVSDSS 144
            :.:|.|..|:..:...|...:|.|:
plant   124 SVNGTLYHKSCFKCTHGGCTISPSN 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 17/51 (33%)
Nebulin 67..94 CDD:459977 10/35 (29%)
NEBU 97..127 CDD:128523 4/29 (14%)
SH3_Nebulin_family_C 600..654 CDD:212723
WLIM1NP_172491.1 LIM1_SF3 6..68 CDD:188824 18/57 (32%)
LIM2_SF3 110..170 CDD:188825 9/52 (17%)
Blue background indicates that the domain is not in the aligned region.

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