DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lasp and limd2

DIOPT Version :10

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:XP_009297834.2 Gene:limd2 / 560139 ZFINID:ZDB-GENE-120906-1 Length:149 Species:Danio rerio


Alignment Length:105 Identity:26/105 - (24%)
Similarity:42/105 - (40%) Gaps:19/105 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KTCARCQKVVYPIEELKCLDKTWHKTCFKCTECGMTLNMKTYKGYNKMPYCEAHIPKAKATAIAD 67
            :|||.|:|.|||:|.|...:..:|..||.|..|...|::.:|.......||:.|..:.       
Zfish    60 ETCASCEKTVYPMERLVANNLIFHAACFCCKHCNTKLSLGSYAALQGEFYCKPHFQQL------- 117

  Fly    68 TPELKRIAENTKIQSNVKYHADFEKAKGKFTQVADDPETL 107
                        .:|...|...|.:.:.|....:.|.|::
Zfish   118 ------------FKSKGNYDEGFGRKQHKELWASKDAESI 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 18/51 (35%)
Nebulin 67..94 CDD:459977 3/26 (12%)
NEBU 97..127 CDD:128523 2/11 (18%)
SH3_Nebulin_family_C 600..654 CDD:212723
limd2XP_009297834.2 None
Blue background indicates that the domain is not in the aligned region.

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