DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lasp and dbnlb

DIOPT Version :9

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:XP_005167394.1 Gene:dbnlb / 553729 ZFINID:ZDB-GENE-050522-293 Length:476 Species:Danio rerio


Alignment Length:633 Identity:117/633 - (18%)
Similarity:206/633 - (32%) Gaps:255/633 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 YCEAHIPKA---KATAIADTPELKRIAENTKIQSNVKYHADFEKAKGKFTQVADDPETLRIKQNT 113
            :|....|.:   |...|..|.|..:.|...:..::|...|:|.|.                    
Zfish    66 FCRVKDPNSGLPKYVLINWTGEGVKDARKGQCANHVSSMANFLKG-------------------- 110

  Fly   114 KHIS-NVAYHGDLEKKAAMEKQRGSAEVSDSSNESEYFSEQLAAEQFSQYAPTASPIPPAATTLH 177
            .|:: |.....|:|..|.|||      |:.:|..:..|.::  ..:|....| ..|:    .:::
Zfish   111 AHVTINARAEEDVEPDAVMEK------VAKASGANYSFHKE--TSRFRDSGP-QGPV----GSVY 162

  Fly   178 QQQQQLQHQQQ--------QQYQQHQQQLQQQQHQHQHYLQQQQQTLPPPPIQHQQYNTAAITPT 234
            |:...:...::        |..:..:::||:::.:.....||.::......::..:.........
Zfish   163 QKTNAMSEIKKTNKDTFWAQAEKDEEKRLQEEKRRAVDERQQLEKERKDREMKEAELRDKKTKER 227

  Fly   235 YQQLQQQQQQQQQQ----RAQQQQLHDPYAHYQQPQALRQQQQQQQQQQQQLLQQQAIKQASHLY 295
            ..|:.:|::.||:|    ||||:||.:            :::::|..||:...:.:::::|    
Zfish   228 ASQIDEQRKYQQKQDVDNRAQQKQLEE------------EEEKKQAAQQKPFYRGESVEKA---- 276

  Fly   296 PTATSQQQQMPPPQSPANPQQQALNSYNEMRSAILQNSHHPSGNSVDQYDQPQQQQHQPQQQSTN 360
                                       ||..:.:.|.|.:|            ::..:.::...|
Zfish   277 ---------------------------NEAAALVSQRSVNP------------REMFKQREMGIN 302

  Fly   361 PTLVAAQQQQSHHSLLNNNASNGGISHSHHSNINNNGHGSQNQMLPPQMRRSAASVVAYDGNSKQ 425
            ||               |..||                   .|..|...|.::..:      |||
Zfish   303 PT---------------NTDSN-------------------TQSSPKPGRLNSPFL------SKQ 327

  Fly   426 QVAAGPGAAQNHLQQLYASPNYAAVTPSENSINVKQHASNGHMPNQQQQHVAGGSNIGKIADYDP 490
              :..|...::.::|  |||..|||..                                      
Zfish   328 --SCDPEPFRSPVRQ--ASPLRAAVAS-------------------------------------- 350

  Fly   491 LTDGPRVVPNAGRSSTTLVYSSEPRGNQGGNSVYPKRIGSVSDIDPANGIYGSLTAAEQAHQQQK 555
                               :..:||..                       |....|..:|.    
Zfish   351 -------------------FEEQPRSQ-----------------------YVEAEAEAEAE---- 369

  Fly   556 HQQYYQQVQMMQQQEHPPQQQQMRQQPSYSSLQEKQS---------RQSTAMRV------YRAIY 605
                |:.||::..:...|.:|   |||.|.:::|..:         .|||...|      .||:|
Zfish   370 ----YEDVQVVSDKYEAPVEQ---QQPQYEAVEEPDAVYENPTQVEEQSTYEPVDERGVCARALY 427

  Fly   606 DYEAQDVDEVSFREGDVIFEVESIDSGWMTGRVERTGKTGMLPANYVE 653
            ||:|.|..|:||...|:|..:|.||.||..| ....|..||.||||||
Zfish   428 DYQAADDTEISFDPDDIITSIEMIDEGWWRG-YGPDGHFGMFPANYVE 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 1/4 (25%)
Nebulin 68..94 CDD:279252 7/25 (28%)
NEBU 97..127 CDD:128523 3/30 (10%)
SH3_Nebulin_family_C 600..654 CDD:212723 28/60 (47%)
dbnlbXP_005167394.1 ADF_drebrin_like 3..138 CDD:200437 21/97 (22%)
RILP-like 182..>243 CDD:304877 10/60 (17%)
SH3_Abp1_eu 422..475 CDD:212893 27/54 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R73
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.