DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lasp and Abi

DIOPT Version :10

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001247091.1 Gene:Abi / 41718 FlyBaseID:FBgn0020510 Length:477 Species:Drosophila melanogaster


Alignment Length:593 Identity:118/593 - (19%)
Similarity:207/593 - (34%) Gaps:171/593 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 TQVADDPETLR-----IKQNTKHISNVAYHGDLEKKAAMEKQRGSAEVSDSSNESEYFSEQLA-- 155
            |::.|..::||     :::...:..:..|..| .||||:|..:            .|.::.||  
  Fly    22 TEIPDGRQSLRDSYTNLERVADYCEDTYYRAD-NKKAALEATK------------NYTTQSLASV 73

  Fly   156 AEQFSQYAPTASPIPPAATTLHQQQQQLQHQQQQQYQQHQQQLQQQQHQHQHYLQQQQ-QTLPPP 219
            |.|.:..|.:           :.|..:||.||..:.:.....:.|..|.|:..:.::: ..|...
  Fly    74 AYQINTLAYS-----------YMQLLELQAQQLGEMESQMNHIAQTVHIHKEKVARREIGVLTAN 127

  Fly   220 PIQHQQYN-TAAITPTYQQLQQQQQQQQQQRAQQQQLHDPYAHYQQPQALRQQQQQQQQQQQQLL 283
            .:..:|:. .|.|.|       ::..:..::.....:.|...|     .:...|..|.:|:.   
  Fly   128 KVSSRQFKIVAPINP-------EKPIKYVRKPIDYSMLDEIGH-----GINSAQHSQVRQKH--- 177

  Fly   284 QQQAIKQASH-----LYPTATSQQQQMPPP--QSPANPQQQALNSYNEMRSAILQNSHHPSGNSV 341
                 :.:||     |.|.:..     |||  :.|..||.....:...:..::  ::....|.|.
  Fly   178 -----RGSSHGSVQSLLPPSVG-----PPPTTKPPTPPQMSRAGNTGTLGKSV--SNTGTLGKSS 230

  Fly   342 DQYDQPQ--QQQHQPQQQSTNPTLVAAQQQQSHHSLLNNNASNGGISHSHHSNINNNGHGSQNQM 404
            .:|..|.  .....|...:.|..:...::..:..|.:....:.||.:.      |....|.....
  Fly   231 REYRTPPVVNPPQVPSHYAPNYPIGHPKRMSTASSTMTTTTTGGGAAG------NERAAGYSALP 289

  Fly   405 LPPQMRRSAASVVAYDGNSKQQVAAG---PGAAQNHLQQLYASP-----NYAAVTPSENS-INVK 460
            :||                .||:|..   |.|..  :|.|...|     :.:::.|:..| :.|.
  Fly   290 MPP----------------SQQIATHVNLPSAGM--MQSLPPPPPTTYDDRSSMPPAPPSPLTVS 336

  Fly   461 QHASNGHMPNQQQQHVAG---GSNIGKIADYDPLTDGPRVVPNAGRSSTTLVYSSEPRGNQGGNS 522
            ||...      :|.|:..   |.||.:               |..|:..:|.::           
  Fly   337 QHEMT------EQSHIGMHTLGRNINR---------------NPNRNHFSLNFA----------- 369

  Fly   523 VYPKRIGSVSDIDPANGIYGSLTAAEQAHQQQKHQQYYQQVQMMQQQEHP--PQQQQMRQQPSY- 584
                |.||.|...|           .....:.:||.:.:.......|..|  |:.|.:   |.: 
  Fly   370 ----RPGSQSPPLP-----------PPPPPEDEHQDFGRPRTSTGPQLAPIVPEDQNL---PGWV 416

  Fly   585 -SSLQEKQSRQSTAMRVYRAIYDYEAQDVDEVSFREGDVIFEVESIDSGWMTGRVERTGKTGMLP 648
             .:..||          ..|||||.|...||:||:|..|::.::..|.||..|.::  |.||:.|
  Fly   417 PKNFIEK----------VVAIYDYYADKDDELSFQESSVLYVLKKNDDGWWEGVMD--GVTGLFP 469

  Fly   649 ANYVEQAV 656
            .||||..|
  Fly   470 GNYVEPCV 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831
Nebulin 67..94 CDD:459977
NEBU 97..127 CDD:128523 6/33 (18%)
SH3_Nebulin_family_C 600..654 CDD:212723 23/53 (43%)
AbiNP_001247091.1 Abi_HHR 105..168 CDD:462279 10/74 (14%)
SH3_Abi 423..474 CDD:212760 23/62 (37%)
Blue background indicates that the domain is not in the aligned region.

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