DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lasp and csrp1a

DIOPT Version :10

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_991130.1 Gene:csrp1a / 378726 ZFINID:ZDB-GENE-030909-4 Length:192 Species:Danio rerio


Alignment Length:158 Identity:38/158 - (24%)
Similarity:63/158 - (39%) Gaps:38/158 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NKTCARCQKVVYPIEELKCLDKTWHKTCFKCTECGMTLNMKTYKGYNKMPYCEAHIPKAKATAIA 66
            || |..|||.||..||::|..:::|::||.|..|...|:..|...:....||:|...|       
Zfish     7 NK-CGCCQKTVYFAEEVQCEGRSFHRSCFLCMVCRKNLDSTTVAVHENEIYCKACYGK------- 63

  Fly    67 DTPELKRIAENTKIQSNVKY-HADFEKAKGKFTQVADDPETLRIK----QNTKHISNVAYHGDLE 126
                              || ...:....|..|...|..|:|.||    ||.:..:|       .
Zfish    64 ------------------KYGPKGYGYGAGAGTLSMDKGESLGIKVVEPQNHQPTNN-------P 103

  Fly   127 KKAAMEKQRGSAEVSDSSNESEYFSEQL 154
            ..:...::.|.::|....:::.|.:|::
Zfish   104 NTSKFAQKFGGSDVCPRCSKAVYAAEKV 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 19/51 (37%)
Nebulin 67..94 CDD:459977 2/27 (7%)
NEBU 97..127 CDD:128523 9/33 (27%)
SH3_Nebulin_family_C 600..654 CDD:212723
csrp1aNP_991130.1 LIM1_CRP1 7..62 CDD:188863 21/55 (38%)
LIM2_CRP 118..171 CDD:188787 2/14 (14%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.