DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lasp and POSH

DIOPT Version :10

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster


Alignment Length:531 Identity:103/531 - (19%)
Similarity:156/531 - (29%) Gaps:231/531 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 QQQQQLQHQQQQQYQQHQQQLQQ-QQH------QHQHYLQQQQQTLPPPPIQHQQYNTAAITPTY 235
            :.||||.||.:...|....|:.| |||      :..:.|..|...|||    .||..||..|.. 
  Fly   481 RDQQQLMHQWKYVPQNADAQMAQVQQHPVAPDVRLNNMLSMQPPDLPP----RQQQATATTTSC- 540

  Fly   236 QQLQQQQQQQQQQRAQQQQLHDPYAHYQQP-QALRQQQQQQQQQQQQLLQQQA--------IKQA 291
                                    :.:.:| :||..::.:.:.:........:        :::.
  Fly   541 ------------------------SVWSKPVEALFSRKSEPKPETATASTTSSSSSGAVGLMRRL 581

  Fly   292 SHLYPTATS---QQQQMPPPQSPANPQQQALNSYNEMRSAILQNSHHPSGN--SVDQYDQP---- 347
            :|:...:.|   ..||:|......|.:      :....||.|...|..||:  |..|:.||    
  Fly   582 THMKTRSKSPGASLQQVPKEAISTNVE------FTTNPSAKLHPVHVRSGSCPSQLQHSQPLNET 640

  Fly   348 -------QQQQHQPQQ---QSTN---------------PTLVAAQQQ---QSHHSLLNNNASNGG 384
                   ||||..|:|   .|||               |.|:.|:|.   .:..|:.||.||   
  Fly   641 PAAKTAAQQQQFLPKQLPSASTNSVSYGSQRVKGSKERPHLICARQSLDAATFRSMYNNAAS--- 702

  Fly   385 ISHSHHSNINNNGHGSQNQMLPPQMRRSAASVVAYDGNSKQQVAAGPGAAQNHLQQLYASPNYAA 449
                                 ||....|.|..| |.|..:|.:..|...:|.|...:.|      
  Fly   703 ---------------------PPPPTTSVAPAV-YAGGQQQVIPGGGAQSQLHANMIIA------ 739

  Fly   450 VTPSENSINVKQHASNGHMPNQQQQHVAGGSNIGKIADYDPLTDGPRVVPNAG--RSSTTLVYSS 512
                               |:.::.|....|::        |:....::..|.  .|:||     
  Fly   740 -------------------PSHRKSHSLDASHV--------LSPSSNMITEAAIKASATT----- 772

  Fly   513 EPRGNQGGNSVYPKRIGSVSDIDPANGIYGSLTAAEQAHQQQKHQQYYQQVQMMQQQEHPPQQQQ 577
                    .|.|..|                                                  
  Fly   773 --------KSPYCTR-------------------------------------------------- 779

  Fly   578 MRQQPSYSSLQEKQSRQSTAMRVYRAIYDYEAQDVDEVSFREGDVIFEVESIDSGWMTGRVERTG 642
                         :||       :|.|..|......|:....||:|:......:||..|...||.
  Fly   780 -------------ESR-------FRCIVPYPPNSDIELELHLGDIIYVQRKQKNGWYKGTHARTH 824

  Fly   643 KTGMLPANYVE 653
            |||:.||::||
  Fly   825 KTGLFPASFVE 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831
Nebulin 67..94 CDD:459977
NEBU 97..127 CDD:128523
SH3_Nebulin_family_C 600..654 CDD:212723 19/54 (35%)
POSHNP_523776.1 RAD18 6..>113 CDD:227719
RING-HC_SH3RF3 8..53 CDD:438408
SH3 139..191 CDD:473055
SH3_SH3RF_2 199..251 CDD:212721
SH3_SH3RF_3 424..477 CDD:212717
SH3_SH3RF_C 782..836 CDD:212719 20/61 (33%)
Blue background indicates that the domain is not in the aligned region.

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