DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lasp and Nrap

DIOPT Version :9

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:XP_006231706.1 Gene:Nrap / 307982 RGDID:1306731 Length:1728 Species:Rattus norvegicus


Alignment Length:681 Identity:151/681 - (22%)
Similarity:244/681 - (35%) Gaps:194/681 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MN-KTCARCQKVVYPIEELKCLDKTWHKTCFKCTECGMTLNMKTYKGYNKMPYCEAHIPKAKA-T 63
            || :.|:||...|||.|::.|:|:||||.||.|..|.|.|::..:..:.|.|||.||.||... |
  Rat     1 MNMQACSRCGYGVYPAEKVSCIDQTWHKACFHCEVCKMMLSVNNFVSHQKKPYCHAHNPKNNTFT 65

  Fly    64 AIADTPELKRIAENTKIQSNVKYHADFEKAKGKFTQVADDPETLRIKQNTKHISNVAYHGDLEKK 128
            ::..||      .|..::::|   |......||     :|.|..:          ...|.|::.|
  Rat    66 SVYRTP------LNLTLKNSV---AAMGGTDGK-----EDGEQFK----------SVLHWDMKSK 106

  Fly   129 AAMEKQRGSAEVSDSSNESEYFSEQLAAEQFSQYAPTASPIPPAATTLHQQQQQLQHQQQQQYQQ 193
            |      |:...|...||.:|:.   ...:.:.:.|.|.|.|.....:..:|.    .::|.|.:
  Rat   107 A------GAGAASRLMNERDYWP---GYGEGNTWCPGALPDPEIVRMVEARQS----LREQGYTE 158

  Fly   194 HQQQLQQQQHQHQHYLQQQQQTLPPPPIQHQQYNTAAITPTYQQLQQQQQQQQQQRAQQQQLHD- 257
            ..:|            .|.:.:.|           |.|||.||:.:...|...|  .|.::.|| 
  Rat   159 DGEQ------------PQGKGSFP-----------AMITPAYQRAKAANQLASQ--VQYKRGHDE 198

  Fly   258 ------PYAHYQQPQALRQQQQQQQQQQQQLLQQQAIKQASHLYPTATSQQQQMPPPQSPANPQQ 316
                  |.|  ..|:.||.....|.|...:..:....::....:|...:             |..
  Rat   199 RVSTFTPVA--DTPELLRANAGGQLQNDVRYTEDGGQQRGKGSFPAMIT-------------PAY 248

  Fly   317 QALNSYNEMRSAILQNSHHPSGNSVDQYDQPQQQQHQPQQQSTNPTLVAAQQQQSHHSLLNNNAS 381
            |......|:.|.:   .:|             ||.|:..:...:|  |.|:...:..|:     .
  Rat   249 QIAKRAAELASDV---RYH-------------QQYHREMKGVASP--VGAEGTMTKDSI-----D 290

  Fly   382 NGGISHSHHSNINNNGHGSQNQMLPPQMRRS-AASVVAYDGNSKQQVAAGPGAAQNHLQQLYASP 445
            ..|.::|.... .:.|.||...|:.|..:.: .|:.:|.|...:|......|||  |...|.|..
  Rat   291 RCGQTYSEECE-EHRGKGSFPAMITPAYQNAKKANELASDIKYRQDFHKMKGAA--HFHSLAAQD 352

  Fly   446 NYAA-----VTPSENSINVKQHASN--GHMPN--QQQQHVAGGSNIGKIADYDPLTDGPRVVPNA 501
            |...     |:...:.:..|:...|  ||..|  :..|.    .|:.||:.:   |...:...| 
  Rat   353 NLVLQRAQNVSKLVSEVEYKKGLENSKGHSINYCETPQF----RNVSKISKF---TSDNKYKEN- 409

  Fly   502 GRSSTTLVYSSEPRGNQGG-----NSVYPKRIGSVSDIDPANGIYGSLTAAEQAHQQQKHQ---- 557
                    |.:..||:..|     ..::..::||::    :|..|    .|:..|....:.    
  Rat   410 --------YQTHLRGHYEGVGMDRRMLHALKVGSLA----SNVAY----KADYKHDVVDYNYPAT 458

  Fly   558 --QYYQQVQMMQQQEHPPQQQQMRQ---QPSYSS-------LQEKQSRQSTAMRVYRAIYDYE-- 608
              .:||....:.    |.:....||   :..:||       :|.|.:.|..:...|||  |||  
  Rat   459 ATPFYQTTMKLA----PLKDVNYRQNIDRLKFSSVTNTPQIVQAKINAQQLSHVNYRA--DYERN 517

  Fly   609 -------------------AQDVDEVSFREG 620
                               ||...||.::||
  Rat   518 KLNYTLPQDAPQMLKAKANAQLFSEVKYKEG 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 24/51 (47%)
Nebulin 68..94 CDD:279252 5/25 (20%)
NEBU 97..127 CDD:128523 4/29 (14%)
SH3_Nebulin_family_C 600..654 CDD:212723 12/42 (29%)
NrapXP_006231706.1 LIM_N_RAP 6..58 CDD:188830 24/51 (47%)
Nebulin 314..340 CDD:279252 5/25 (20%)
NEBU 486..516 CDD:128523 10/31 (32%)
NEBU 521..551 CDD:128523 6/28 (21%)
Nebulin 563..589 CDD:279252
NEBU 626..656 CDD:128523
NEBU 725..755 CDD:128523
NEBU 760..790 CDD:128523
NEBU 968..998 CDD:128523
NEBU 1003..1031 CDD:128523
Nebulin 1047..1071 CDD:279252
NEBU 1246..1276 CDD:128523
NEBU 1355..1380 CDD:128523
NEBU 1598..1624 CDD:128523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1702
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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