DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lasp and Lasp1

DIOPT Version :9

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_116002.1 Gene:Lasp1 / 29278 RGDID:68408 Length:263 Species:Rattus norvegicus


Alignment Length:655 Identity:146/655 - (22%)
Similarity:181/655 - (27%) Gaps:396/655 - (60%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNKTCARCQKVVYPIEELKCLDKTWHKTCFKCTECGMTLNMKTYKGYNKMPYCEAHIPKAKATAI 65
            ||..||||.|:|||.|::.||||.|||.||.|..|.||||||.||||.|.|||.||.||...|.:
  Rat     1 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTMV 65

  Fly    66 ADTPELKRIAENTKIQSNVKYHADFEKAKGK-FTQVADDPETLRIKQNTKHISNVAYHGDLEKKA 129
            |||||..|:.:.:::||.|:|..:|||.||| |:.|||.||..|||:....|||:.||.:.||  
  Rat    66 ADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEFEK-- 128

  Fly   130 AMEKQRGSAEVSDSSNESEYFSEQLAAEQFSQYAPTASP-IPPAATTLHQQQQQLQHQQQQQYQQ 193
                                          |:..|:... |.|            :.::.|....
  Rat   129 ------------------------------SRMGPSGGEGIEP------------ERREAQDSSS 151

  Fly   194 HQQQLQQQQHQHQHYLQQQQQTLPPPPIQHQQYNTAAITPTYQQLQQQQQQQQQQRAQQQQLHDP 258
            :::..:|||.|..|        :|          |:|  |.|||            .||||:...
  Rat   152 YRRPTEQQQPQPHH--------IP----------TSA--PVYQQ------------PQQQQVTPS 184

  Fly   259 YAHYQQPQALRQQQQQQQQQQQQLLQQQAIKQASHLYPTATSQQQQMPPPQSPANPQQQALNSYN 323
            |..|::|.|                                                        
  Rat   185 YGGYKEPAA-------------------------------------------------------- 193

  Fly   324 EMRSAILQNSHHPSGNSVDQYDQPQQQQHQPQQQSTNPTLVAAQQQQSHHSLLNNNASNGGISHS 388
                                                                             
  Rat   194 ----------------------------------------------------------------- 193

  Fly   389 HHSNINNNGHGSQNQMLPPQMRRSAASVVAYDGNSKQQVAAGPGAAQNHLQQLYASPNYAAVTPS 453
                             |..::|||                 ||                     
  Rat   194 -----------------PVSIQRSA-----------------PG--------------------- 203

  Fly   454 ENSINVKQHASNGHMPNQQQQHVAGGSNIGKIADYDPLTDGPRVVPNAGRSSTTLVYSSEPRGNQ 518
                                                                             
  Rat   204 ----------------------------------------------------------------- 203

  Fly   519 GGNSVYPKRIGSVSDIDPANGIYGSLTAAEQAHQQQKHQQYYQQVQMMQQQEHPPQQQQMRQQPS 583
            ||.    ||                                                        
  Rat   204 GGG----KR-------------------------------------------------------- 208

  Fly   584 YSSLQEKQSRQSTAMRVYRAIYDYEAQDVDEVSFREGDVIFEVESIDSGWMTGRVERTGKTGMLP 648
                             |||:|||.|.|.|||||::||.|..|:.||.|||.|.|||||.|||||
  Rat   209 -----------------YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLP 256

  Fly   649 ANYVE 653
            |||||
  Rat   257 ANYVE 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 35/51 (69%)
Nebulin 68..94 CDD:279252 11/25 (44%)
NEBU 97..127 CDD:128523 14/29 (48%)
SH3_Nebulin_family_C 600..654 CDD:212723 38/54 (70%)
Lasp1NP_116002.1 LIM_LASP 5..57 CDD:188831 35/51 (69%)
NEBU 62..92 CDD:128523 12/29 (41%)
Nebulin 1 64..95 13/30 (43%)
Nebulin 2 97..131 17/65 (26%)
NEBU 98..128 CDD:128523 14/29 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..207 37/405 (9%)
SH3_Lasp1_C 205..263 CDD:212867 41/134 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354466
Domainoid 1 1.000 91 1.000 Domainoid score I7541
eggNOG 1 0.900 - - E1_KOG1702
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004734
OrthoInspector 1 1.000 - - oto96495
orthoMCL 1 0.900 - - OOG6_105899
Panther 1 1.100 - - LDO PTHR46218
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4428
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.700

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