DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lasp and valv-1

DIOPT Version :10

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_501187.1 Gene:valv-1 / 182010 WormBaseID:WBGene00015216 Length:84 Species:Caenorhabditis elegans


Alignment Length:51 Identity:21/51 - (41%)
Similarity:27/51 - (52%) Gaps:2/51 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CARCQKVVYPIEELKCLDKTWHKTCFKCTE--CGMTLNMKTYKGYNKMPYC 53
            |..|||.||..|.:..|.|.||:.|.||..  ||.||:..::..:...|||
 Worm     4 CPNCQKPVYFAERVSSLGKDWHRPCLKCANKACGKTLSAGSHSEHEGKPYC 54

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 21/51 (41%)
Nebulin 67..94 CDD:459977
NEBU 97..127 CDD:128523
SH3_Nebulin_family_C 600..654 CDD:212723
valv-1NP_501187.1 LIM_TLP_like 4..58 CDD:188785 21/51 (41%)
Blue background indicates that the domain is not in the aligned region.

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