DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lasp and Lasp1

DIOPT Version :9

Sequence 1:NP_730192.2 Gene:Lasp / 39864 FlyBaseID:FBgn0063485 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_034818.1 Gene:Lasp1 / 16796 MGIID:109656 Length:263 Species:Mus musculus


Alignment Length:655 Identity:145/655 - (22%)
Similarity:181/655 - (27%) Gaps:396/655 - (60%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNKTCARCQKVVYPIEELKCLDKTWHKTCFKCTECGMTLNMKTYKGYNKMPYCEAHIPKAKATAI 65
            ||..||||.|:|||.|::.||||.|||.||.|..|.||||||.||||.|.|||.||.||...|.:
Mouse     1 MNPNCARCGKIVYPTEKVNCLDKYWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTMV 65

  Fly    66 ADTPELKRIAENTKIQSNVKYHADFEKAKGK-FTQVADDPETLRIKQNTKHISNVAYHGDLEKKA 129
            |||||..|:.:.:::||.|:|..:|||.||| |:.|||.||..|||:....|||:.||.:.||  
Mouse    66 ADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEFEK-- 128

  Fly   130 AMEKQRGSAEVSDSSNESEYFSEQLAAEQFSQYAPTASP-IPPAATTLHQQQQQLQHQQQQQYQQ 193
                                          |:..|:... :.|            :.::.|....
Mouse   129 ------------------------------SRMGPSGGEGVEP------------ERREAQDSSS 151

  Fly   194 HQQQLQQQQHQHQHYLQQQQQTLPPPPIQHQQYNTAAITPTYQQLQQQQQQQQQQRAQQQQLHDP 258
            :::..:|||.|..|        :|          |:|  |.|||            .||||:...
Mouse   152 YRRPTEQQQPQPHH--------IP----------TSA--PVYQQ------------PQQQQMTSS 184

  Fly   259 YAHYQQPQALRQQQQQQQQQQQQLLQQQAIKQASHLYPTATSQQQQMPPPQSPANPQQQALNSYN 323
            |..|::|.|                                                        
Mouse   185 YGGYKEPAA-------------------------------------------------------- 193

  Fly   324 EMRSAILQNSHHPSGNSVDQYDQPQQQQHQPQQQSTNPTLVAAQQQQSHHSLLNNNASNGGISHS 388
                                                                             
Mouse   194 ----------------------------------------------------------------- 193

  Fly   389 HHSNINNNGHGSQNQMLPPQMRRSAASVVAYDGNSKQQVAAGPGAAQNHLQQLYASPNYAAVTPS 453
                             |..::|||                 ||                     
Mouse   194 -----------------PVSIQRSA-----------------PG--------------------- 203

  Fly   454 ENSINVKQHASNGHMPNQQQQHVAGGSNIGKIADYDPLTDGPRVVPNAGRSSTTLVYSSEPRGNQ 518
                                                                             
Mouse   204 ----------------------------------------------------------------- 203

  Fly   519 GGNSVYPKRIGSVSDIDPANGIYGSLTAAEQAHQQQKHQQYYQQVQMMQQQEHPPQQQQMRQQPS 583
            ||.    ||                                                        
Mouse   204 GGG----KR-------------------------------------------------------- 208

  Fly   584 YSSLQEKQSRQSTAMRVYRAIYDYEAQDVDEVSFREGDVIFEVESIDSGWMTGRVERTGKTGMLP 648
                             |||:|||.|.|.|||||::||.|..|:.||.|||.|.|||||.|||||
Mouse   209 -----------------YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLP 256

  Fly   649 ANYVE 653
            |||||
Mouse   257 ANYVE 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaspNP_730192.2 LIM_LASP 5..57 CDD:188831 35/51 (69%)
Nebulin 68..94 CDD:279252 11/25 (44%)
NEBU 97..127 CDD:128523 14/29 (48%)
SH3_Nebulin_family_C 600..654 CDD:212723 38/54 (70%)
Lasp1NP_034818.1 LIM_LASP 5..57 CDD:188831 35/51 (69%)
Nebulin 1 61..95 14/33 (42%)
NEBU 62..92 CDD:128523 12/29 (41%)
Nebulin 2 97..131 17/65 (26%)
NEBU 98..128 CDD:128523 14/29 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 123..207 35/404 (9%)
SH3_Lasp1_C 205..263 CDD:212867 41/134 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850758
Domainoid 1 1.000 91 1.000 Domainoid score I7725
eggNOG 1 0.900 - - E1_KOG1702
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.864974 Normalized mean entropy S3370
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004734
OrthoInspector 1 1.000 - - oto92940
orthoMCL 1 0.900 - - OOG6_105899
Panther 1 1.100 - - LDO PTHR46218
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R73
SonicParanoid 1 1.000 - - X4428
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.680

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