DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Galphaf and Gnaq

DIOPT Version :9

Sequence 1:NP_524118.1 Gene:Galphaf / 39861 FlyBaseID:FBgn0010223 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_112298.2 Gene:Gnaq / 81666 RGDID:620770 Length:359 Species:Rattus norvegicus


Alignment Length:396 Identity:136/396 - (34%)
Similarity:214/396 - (54%) Gaps:45/396 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LLRCLRQQPAKPAAVMTHKEDQYPVSLDHHVLKDMAKGVRDT--TVKILLLGTAESGKTTIIKQM 67
            ::.|...:.||.|.           .::..:.:.:.:..||.  .:|:|||||.||||:|.||||
  Rat     6 IMACCLSEEAKEAR-----------RINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQM 59

  Fly    68 RILHINGFTDDERREKIPEIYQNIHESILQLVGQMGVLGIDFGSCTSERSADYILSLPGSAPEYM 132
            ||:|.:|::|:::|.....:||||..::..::..|..|.|.:....::..|..:..:........
  Rat    60 RIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAF 124

  Fly   133 NEEYCDHVTTLWNDVGIRACYDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGI 197
            ...|.|.:.:||||.||:.||||..|:.|.||.||:|::..|::|..|:|:.:|:|..|..||||
  Rat   125 ENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGI 189

  Fly   198 SQITFRVPIPKSMGGGEQQFQMYDVGGQRDQRNKWIQVFEGIQAVLFLISCSEFDQNLREDPSQN 262
            .:..|.:.        ...|:|.||||||.:|.|||..||.:.:::||::.||:||.|.|..::|
  Rat   190 IEYPFDLQ--------SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNEN 246

  Fly   263 RLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIRAGKHIVDYFPEYEDFCKRPQQDNCFGE 327
            |::|:..|||.:....:..::.:|:||||.|::|.||.. .|:|||||||:.    ||:|     
  Rat   247 RMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMY-SHLVDYFPEYDG----PQRD----- 301

  Fly   328 SDWTKMFIKQKLVDITQEPFKRHSRNQVDLGTSERECYYHFTVATDTRCIRDVFCDVQKMILSEN 392
            :...:.||.:..||:..:              |::..|.|||.||||..||.||..|:..||..|
  Rat   302 AQAAREFILKMFVDLNPD--------------SDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352

  Fly   393 VSSMGL 398
            :....|
  Rat   353 LKEYNL 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GalphafNP_524118.1 G_alpha 30..397 CDD:214595 131/368 (36%)
G-alpha 48..392 CDD:206639 128/343 (37%)
GnaqNP_112298.2 G-alpha 40..353 CDD:206639 128/344 (37%)
G1 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 41..54 10/12 (83%)
G2 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 178..186 3/7 (43%)
G3 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 201..210 6/8 (75%)
G4 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 270..277 5/6 (83%)
G5 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 329..334 3/4 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0082
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D754573at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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