DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Galphaf and Gna13

DIOPT Version :9

Sequence 1:NP_524118.1 Gene:Galphaf / 39861 FlyBaseID:FBgn0010223 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001013137.1 Gene:Gna13 / 303634 RGDID:1310221 Length:377 Species:Rattus norvegicus


Alignment Length:398 Identity:144/398 - (36%)
Similarity:213/398 - (53%) Gaps:52/398 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PAAVMTHKEDQYPVSLDHHVLKDMAKGV-RDTT-----VKILLLGTAESGKTTIIKQMRILHING 74
            |..|:|:.|.:     .....|::.|.: |:.|     |||||||..||||:|.:|||||:|...
  Rat    16 PGCVLTNGEAE-----QQRKSKEIDKCLSREKTYVKRLVKILLLGAGESGKSTFLKQMRIIHGQD 75

  Fly    75 FTDDERREKIPEIYQNIHESILQLVGQMGVLGIDFGSCTSERSADYILSLPGSAP---EYMNE-- 134
            |....|.|..|.||.|:.:.:..||.....|.|.:|...::...|.:::....||   :.|.|  
  Rat    76 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQVHGDKLMAFDTRAPMAAQGMVETR 140

  Fly   135 ---EYCDHVTTLWNDVGIRACYDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTG 196
               :|...:..||:|.||:..|||..||.|.:|.||||||..::...:||||.:|||.:|:.|.|
  Rat   141 VFLQYLPAIRALWDDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKG 205

  Fly   197 ISQITFRVP-IPKSMGGGEQQFQMYDVGGQRDQRNKWIQVFEGIQAVLFLISCSEFDQNLREDPS 260
            |.:..|.:. :|         |:|.||||||.:|.:|.:.|:.:.::|||:|.|||||.|.||..
  Rat   206 IHEYDFEIKNVP---------FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRL 261

  Fly   261 QNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIRAGKHIVDYFPEYEDFCKRPQQDNCF 325
            .|||.|:|.:|..:..||..::..:|:||||.|::|.|::. ..|.|||.|:|.      ..:|.
  Rat   262 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV-VSIKDYFLEFEG------DPHCL 319

  Fly   326 GESDWTKMFIKQKLVDITQEPFKRHSRNQVDLGTSERECYYHFTVATDTRCIRDVFCDVQKMILS 390
            .:       :::.||    |.|:...|:|     .:|..|:|||.|.:|..||.||.||:..||.
  Rat   320 RD-------VQKFLV----ECFRGKRRDQ-----QQRPLYHHFTTAINTENIRLVFRDVKDTILH 368

  Fly   391 ENVSSMGL 398
            :|:..:.|
  Rat   369 DNLKQLML 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GalphafNP_524118.1 G_alpha 30..397 CDD:214595 139/381 (36%)
G-alpha 48..392 CDD:206639 134/352 (38%)
Gna13NP_001013137.1 G_alpha 29..375 CDD:214595 139/377 (37%)
G-alpha 49..371 CDD:206639 134/353 (38%)
G1 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 50..63 10/12 (83%)
G2 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 195..203 4/7 (57%)
G3 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 218..227 6/8 (75%)
G4 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 287..294 5/6 (83%)
G5 motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01230 347..352 2/4 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345198
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0082
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D754573at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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