DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Galphaf and gpa-5

DIOPT Version :9

Sequence 1:NP_524118.1 Gene:Galphaf / 39861 FlyBaseID:FBgn0010223 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_508393.1 Gene:gpa-5 / 180527 WormBaseID:WBGene00001667 Length:385 Species:Caenorhabditis elegans


Alignment Length:441 Identity:116/441 - (26%)
Similarity:194/441 - (43%) Gaps:106/441 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LLRCLRQQPAKPAAVMTHKEDQYPVSLDHHVLKDMAKGVRDTTVKILLLGTAESGKTTIIKQMRI 69
            |:.|.:::.|:    :.:::....:.:::...|        ..:|:||||..:|||:||:||||:
 Worm     3 LVTCKQEREAE----LQNRQIDTQIRIENQANK--------RKIKMLLLGVTDSGKSTIVKQMRV 55

  Fly    70 LHINGFTDDE-------RREKIPEIYQNIHESILQLVGQMGVLGIDFGSCTSERSADYILSLPGS 127
            .:::||.:.|       .|..|.:.::||...||.         .|......|:....:.:....
 Worm    56 NYLDGFNETEVVNAIFVIRNNIIDAFKNICNIILH---------SDITVTQEEKVLVKLFAYESG 111

  Fly   128 APEYMNEEYCDHVTTLWNDVG----IRACYDRSNEFPLL-DSAKYFLDNFVRISDAEYIPSTEDI 187
            ..|.|.|  .|.:..: |.|.    |:..::|....|:: |...||..|..||:.:.|:|:.||:
 Worm   112 KIELMQE--VDELNVI-NAVSGYECIKQFFERFAFHPMVPDHIHYFYPNLDRIASSNYVPTAEDL 173

  Fly   188 LHSRKITTGISQITFRVPIPKSMGGGEQQFQMYDVGGQRDQRNKWIQVFEGIQAVLFLISCSEFD 252
            :|.|:.|.|:.:|:|...        :...::.|||||:.:|.|||..|||:.||:|:.|.:.|:
 Worm   174 IHMRQTTLGVHEISFDYT--------KHIIRLIDVGGQKTERRKWIHFFEGVTAVMFVCSLASFN 230

  Fly   253 QNLREDPSQ------------------------------NRLQEALKLFRAVWQNRFLASAGLIV 287
            |...|:|..                              |||.|::.||:::.:|.||..:..::
 Worm   231 QTTEEEPKAFVWESSLNKVQNKVLVRSAGKAKVEKPGLINRLDESVDLFKSIRENSFLKMSNFML 295

  Fly   288 FLNKYDIMERKIRAGKHIV--DYFPEYEDFCKRPQQDNCFGESDWTKMFIKQKLVDITQEPFKRH 350
            ||||.|::.:|:   ..:|  ||||:|:.:......|....|      ||:....: ..||    
 Worm   296 FLNKKDLLTKKL---TKVVFSDYFPDYKKWITNDNSDVSVAE------FIENMFRE-GLEP---- 346

  Fly   351 SRNQVDLGTSERECYYHFTVATDTRCIRDVF---CDVQKMILSENVSSMGL 398
                      |:..|.|.|.||.|..|...|   |||   |..:|.....|
 Worm   347 ----------EKRMYAHLTQATVTANIEGTFALCCDV---IFGKNYEDTNL 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GalphafNP_524118.1 G_alpha 30..397 CDD:214595 112/413 (27%)
G-alpha 48..392 CDD:206639 110/390 (28%)
gpa-5NP_508393.1 G_alpha 13..383 CDD:214595 112/428 (26%)
G-alpha 34..379 CDD:206639 110/391 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0082
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D754573at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.