DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Galphaf and gpa-3

DIOPT Version :9

Sequence 1:NP_524118.1 Gene:Galphaf / 39861 FlyBaseID:FBgn0010223 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001309498.1 Gene:gpa-3 / 179319 WormBaseID:WBGene00001665 Length:353 Species:Caenorhabditis elegans


Alignment Length:353 Identity:115/353 - (32%)
Similarity:190/353 - (53%) Gaps:35/353 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 VKILLLGTAESGKTTIIKQMRILHINGFTDDERREKIPEIYQNIHESILQLVGQMGVLGIDFGSC 112
            ||:||||..|.||:|::|||||||.:|||.:|..::...::.|..:::..::..|..|.:.|...
 Worm    34 VKLLLLGAGECGKSTVLKQMRILHDHGFTAEEAEQQKSVVFNNTLQAMTAILKGMEALRMTFDKP 98

  Fly   113 TSERSADYILSLPGSAPE--YMNEEYCDHVTTLWNDVGIRACYDRSNEFPLLDSAKYFLDNFVRI 175
            ..|..|.:::.......|  ...||..:.:..||||..::....:.|||.:.:||.:||.:..||
 Worm    99 IRENDAKFVMESHKMLQEAKVFPEELANAIQALWNDKAVQQVIAKGNEFQMPESAPHFLSSLDRI 163

  Fly   176 SDAEYIPSTEDILHSRKITTGISQITFRVPIPKSMGGGEQQFQMYDVGGQRDQRNKWIQVFEGIQ 240
            ...:|.|:.:|||.||..||||.::.|::   ||:     .|:::||||||.:|.|||..||.:.
 Worm   164 KLPDYNPTEQDILLSRIKTTGIVEVKFQM---KSV-----DFRVFDVGGQRSERKKWIHCFEDVN 220

  Fly   241 AVLFLISCSEFDQNLREDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIRAGKHI 305
            |::|:.:.||:||.|.||.:.||:.|:::||.::..:|:..:..:|:||||.|:...||:. ..|
 Worm   221 AIIFIAAISEYDQVLFEDETTNRMIESMRLFESICNSRWFINTSMILFLNKKDLFAEKIKR-TSI 284

  Fly   306 VDYFPEYEDFCKRPQQDNCFGESDWTKMFIKQKLVDITQEPFKRHSRNQVDLGTSERECYYHFTV 370
            ...||:|:.  .:...::|        .:|::|...:...|              |:..|.|.|.
 Worm   285 KSAFPDYKG--AQTYDESC--------RYIEEKFDGLNANP--------------EKTIYMHQTC 325

  Fly   371 ATDTRCIRDVFCDVQKMILSENVSSMGL 398
            ||||..::.:...|..||:..|:...||
 Worm   326 ATDTDQVQMILDSVIDMIIQANLQGCGL 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GalphafNP_524118.1 G_alpha 30..397 CDD:214595 113/350 (32%)
G-alpha 48..392 CDD:206639 112/345 (32%)
gpa-3NP_001309498.1 G-alpha 34..348 CDD:206639 112/346 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0082
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D754573at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.