DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta6 and psmb13a

DIOPT Version :10

Sequence 1:NP_524115.1 Gene:Prosbeta6 / 39855 FlyBaseID:FBgn0002284 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_571752.2 Gene:psmb13a / 64280 ZFINID:ZDB-GENE-001208-2 Length:281 Species:Danio rerio


Alignment Length:206 Identity:49/206 - (23%)
Similarity:87/206 - (42%) Gaps:29/206 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQ 93
            |.:|..:...|..|:.||||.:|...:..:..:|:..::|......||..|||...|..:...:.
Zfish    44 GTTIAGVVFKDGVVLGADTRATSDEVVADKMCAKIHYIAPNIYCCGAGTAADTEKTTDMLSSNLT 108

  Fly    94 SYEHTHLR----TMTTEAVAQMLSIAMYNRRFFPYY----VSNILAGIDNEGKGVVYSYDPIGHC 150
            .:.....|    .|....:..||         |.|:    .:.||.|:|..|.. :|:..|.|..
Zfish   109 IFSMNSGRNPRVVMAVNIIQDML---------FRYHGMIGANLILGGVDCTGSH-LYTVGPYGSM 163

  Fly   151 EKATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFISAAERDIYTGDSV 215
            :|..|.|.|:.......:           |||..|:.:..|:|.::.||...:....|:.:|:::
Zfish   164 DKVPYLAMGSGDLAAMGI-----------LEDRFKVNMDLEQAKALVSDAIQAGIMCDLGSGNNI 217

  Fly   216 LINIITKDGIE 226
            .:.:|||:|::
Zfish   218 DLCVITKEGVD 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta6NP_524115.1 proteasome_beta_type_1 22..235 CDD:239726 49/206 (24%)
psmb13aNP_571752.2 proteasome_beta_type_7 45..233 CDD:239732 48/205 (23%)
Pr_beta_C 241..272 CDD:463597
Blue background indicates that the domain is not in the aligned region.

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