DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta6 and pam1

DIOPT Version :9

Sequence 1:NP_524115.1 Gene:Prosbeta6 / 39855 FlyBaseID:FBgn0002284 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_594729.1 Gene:pam1 / 2542062 PomBaseID:SPAC22F8.06 Length:225 Species:Schizosaccharomyces pombe


Alignment Length:225 Identity:98/225 - (43%)
Similarity:139/225 - (61%) Gaps:6/225 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 MKHPDFSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADT 81
            |....|.||..|||:.||||||.||::|.|||..:||||::|.|.::.::....|:|::|..||.
pombe     1 MSQSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADA 65

  Fly    82 LSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDP 146
            |:|...|:.|:..|...|.|.|:.::.|.|:...:|.:|||||||...:||||.||||.:||:||
pombe    66 LALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDP 130

  Fly   147 IGHCEKATYRAGGTAGTLLQPVLDNQIGHKNMNL------EDADKIKLTKERAVSVASDTFISAA 205
            :|..|:...||||:|...:.|.||||:...|..:      |...:..|..|.|:.:.:|.|.||.
pombe   131 VGSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKITTDAFTSAG 195

  Fly   206 ERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
            ||.|..|||||:.||||:|:|.|.:.|::|
pombe   196 ERHIEVGDSVLVKIITKEGVETRIIPLKKD 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta6NP_524115.1 proteasome_beta_type_1 22..235 CDD:239726 96/218 (44%)
PRE1 24..225 CDD:223711 91/206 (44%)
pam1NP_594729.1 PRE1 2..221 CDD:223711 95/218 (44%)
proteasome_beta_type_1 6..225 CDD:239726 96/218 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 153 1.000 Domainoid score I1066
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2087
Inparanoid 1 1.050 193 1.000 Inparanoid score I1036
OMA 1 1.010 - - QHG54193
OrthoFinder 1 1.000 - - FOG0004805
OrthoInspector 1 1.000 - - oto102101
orthoMCL 1 0.900 - - OOG6_101631
Panther 1 1.100 - - LDO PTHR11599
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1009
SonicParanoid 1 1.000 - - X3385
TreeFam 1 0.960 - -
1413.860

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