DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK2 and Y105C5A.24

DIOPT Version :10

Sequence 1:NP_001026971.1 Gene:LIMK2 / 3985 HGNCID:6614 Length:686 Species:Homo sapiens
Sequence 2:NP_502888.2 Gene:Y105C5A.24 / 190882 WormBaseID:WBGene00013643 Length:478 Species:Caenorhabditis elegans


Alignment Length:353 Identity:91/353 - (25%)
Similarity:143/353 - (40%) Gaps:59/353 - (16%)


- Green bases have known domain annotations that are detailed below.


Human   265 RSNSISKSPGPSSPKEPLLFSRDISRSESLRCSSSYSQQIFRPC-DLIHGEVLGKGFFGQAIKVT 328
            |..|.|.|.||.:|    :..|. :|...| |.:|...:|...| |.::...||||.||...|..
 Worm     3 RKPSSSSSTGPPAP----VIQRK-TRDSDL-CLTSDIPKIPPNCIDELNSHFLGKGTFGVVEKTK 61

Human   329 HKATGKVMVMKELIRCDEETQKTFL-TEVKVMRSL-DHPNVLKFIGVLYKDKK--LNLLTEYIEG 389
            ::.|.........|:....|..:.| .|.|.|.:| :|.|::|..| :|:..:  ..|:.||::.
 Worm    62 YRKTRDDTYRPAAIKYASATHLSILKREAKHMWNLRNHVNIIKIYG-MYESHRNGQGLVMEYMDC 125

Human   390 GTLKDFL--RSMDPFPWQQKVRFAKGIASGMAYLHSMCIIHRDLNSHNCLIK-LDKTVVVADFGL 451
            |.:.|.:  |....:.......:...::|.:.:.||...|||||...|.|:. ..:|:.:.|||.
 Worm   126 GCVADLIYDRKNIEYKMDHVASWMYQLSSAVNFFHSKDQIHRDLKLQNMLLSHHHRTLKICDFGT 190

Human   452 SRLIVEERKRAPMEKATTKKRTLRKNDRKKRYTVVGNPYWMAPEMLNGKSYDETVDIFSFGIVLC 516
            ...|         .::.|..|              |:|..||||:...:.|:...||||.||::.
 Worm   191 FTSI---------HQSMTSNR--------------GSPITMAPEIFRCEPYNMKADIFSIGIIMW 232

Human   517 EIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPT--------DCPPAFFPLAAICCRLEPESRAPP 573
            ::|.:.:      |.|::..:...|:   .|.|        :|.|........|....|.||...
 Worm   233 QMIARDH------PYTMNMPITPFLY---NVATRNLRPHEIECNPILSNFYKRCWSDNPASRPTS 288

Human   574 GAAGEGPGCADDEGPVRRQGKVTIKYDP 601
            ....|...|...|.|   .|.|.: :||
 Worm   289 ADCVEYFRCLRSEYP---NGNVPL-WDP 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK2NP_001026971.1 LIM <15..44 CDD:413332
LIM2_LIMK2 46..104 CDD:188849
PDZ_LIMK-like 126..218 CDD:467236
Protein Kinases, catalytic domain 316..570 CDD:473864 66/268 (25%)
PP1_inhibitor 564..686 CDD:461630 11/38 (29%)
Y105C5A.24NP_502888.2 Protein Kinases, catalytic domain 49..287 CDD:473864 68/270 (25%)
Blue background indicates that the domain is not in the aligned region.

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