DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment UQCR-C2 and Pmpcb

DIOPT Version :9

Sequence 1:NP_001261955.1 Gene:UQCR-C2 / 39846 FlyBaseID:FBgn0250814 Length:440 Species:Drosophila melanogaster
Sequence 2:NP_082707.1 Gene:Pmpcb / 73078 MGIID:1920328 Length:489 Species:Mus musculus


Alignment Length:464 Identity:106/464 - (22%)
Similarity:183/464 - (39%) Gaps:54/464 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LLRAIAK---------RGYATCPRPVGDLSAVNVKVLENKLVVATADATLPVSRVSLVLGAGSRN 65
            |.||.|:         |.....|:.|.::....|..|||.|.||:.::.|....|.|.:.||||.
Mouse    27 LRRAAAQPLYFGGDRLRSTQAAPQVVLNVPETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRY 91

  Fly    66 ESYDIQGASHLLRLAGGLSTQNSTAFAIARNIQQVGGTLTTWGDRELVGYTVTTTADNAETGLRY 130
            |:....|.:|.|.......|:..:...:...|:.:|..|..:..||...|.....:.:....:..
Mouse    92 ENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEI 156

  Fly   131 LQDLLQ-PAFKPWELVDNAKTVVNQLNAVST--EERAIELVHKAAFRN-GLGNSIYSPRFQLGKL 191
            |.|::| ......|:......::.::..|.|  :|...:.:|..|::| .||.:|..|...:..:
Mouse   157 LADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSI 221

  Fly   192 SSESLLHYVAQTFAAGRAAVVGV-GIDNNTLAGFAQTLQFPSGGS----KAA-----SANWYGGD 246
            :.:.|:.|:...:...|..:... |:.:|.|...|   :|..|.|    |.|     ...:.|.:
Mouse   222 NRKDLVDYITTHYKGPRIVLAAAGGVCHNELLELA---KFHFGDSLCSHKGAIPALPPCKFTGSE 283

  Fly   247 AR----KDTSGHRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGEAVN---- 303
            .|    |....|.| :||...|.|   |.:.:...:        |.|..|.....||..:|    
Mouse   284 IRVRDDKMPLAHLA-IAVEAVGWA---HPDTICLMV--------ANTLIGNWDRSFGGGMNLSSK 336

  Fly   304 -----CAGGVGASVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRGLK--SASVSDKDVARGK 361
                 |.|.:..|.::.|.||:|.||:|..:..:...:...:..:....|  ...|::.:|||.|
Mouse   337 LAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADMLHVVQNEWKRLCTDVTESEVARAK 401

  Fly   362 ALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLGAIDGISQSQVQEAAKK-VGSSKLAVG 425
            .|||..::.:......:.::||||.......:....|...||.:....|:....| :.....|:.
Mouse   402 NLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSPAIA 466

  Fly   426 AIGHLANVP 434
            |:|.:..:|
Mouse   467 ALGPIERLP 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C2NP_001261955.1 PqqL 22..417 CDD:223685 97/424 (23%)
Peptidase_M16 41..185 CDD:279066 34/147 (23%)
Peptidase_M16_C 190..364 CDD:282978 44/198 (22%)
PmpcbNP_082707.1 PqqL 46..478 CDD:223685 101/445 (23%)
Peptidase_M16 68..215 CDD:279066 33/146 (23%)
Peptidase_M16_C 220..404 CDD:282978 44/198 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.