DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C2 and Pmpca

DIOPT Version :9

Sequence 1:NP_001261955.1 Gene:UQCR-C2 / 39846 FlyBaseID:FBgn0250814 Length:440 Species:Drosophila melanogaster
Sequence 2:NP_775272.1 Gene:Pmpca / 66865 MGIID:1918568 Length:524 Species:Mus musculus


Alignment Length:468 Identity:102/468 - (21%)
Similarity:184/468 - (39%) Gaps:74/468 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PRPV------GDLSAVNVKVLENKLVVATADATLPVSRVSLVLGAGSRNESYDIQGASHLL-RLA 80
            |:|:      .:.....|..|:|.|.||:.:.......|.:::.:|||.|:..:.|.:|.| :||
Mouse    51 PKPIFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLA 115

  Fly    81 GGLSTQNSTAFAIARNIQQVGGTLTTWGDRELVGYTVTTTADNAETGLRYLQD-LLQPAFKPWEL 144
            ...:.:..:...|...:::.||.......|:...|.|:..:...:|.:..|.| :|.|.....|:
Mouse   116 FSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVDLLADVVLHPRLTDEEI 180

  Fly   145 VDNAKTVVNQLNAVS----TEERAIELVHKAAFR-NGLGNSIYSPRFQLGKLSSESLLHYVAQTF 204
            ......|..:|..::    .|....|::|:|||| |.:|...:.|...:.|:..|.|..|:...:
Mouse   181 EMTRMAVQFELEDLNMRPDPEPLLTEMIHEAAFRENTVGLHRFCPVENIAKIDREVLHSYLKNYY 245

  Fly   205 AAGRAAVVGVGIDNNTLAGFAQTLQF---PSGGSKA------ASANWYGG--DARKDTSG----- 253
            ...|..:.|||:::..|...|:....   |:.|:..      :.|.:.||  ...:|.|.     
Mouse   246 TPDRMVLAGVGVEHEHLVECARKYLVGAEPAWGAPGTVDVDRSVAQYTGGIIKVERDMSNVSLGP 310

  Fly   254 -------HRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGEAVNCAGGVGA- 310
                   |    .:.|..:.:....:.:.||:|...:|         ..|.|.     |||.|. 
Mouse   311 TPIPELTH----IMVGLESCSFLEDDFIPFAVLNMMMG---------GGGSFS-----AGGPGKG 357

  Fly   311 -----------------SVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRG--LKSASVSDKD 356
                             :..:.:.||.|.||.....|||.:.:.:.||.:.:.  |...:|...:
Mouse   358 MFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVE 422

  Fly   357 VARGKALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLGAIDGISQSQVQEAAKKVGSSK 421
            :.|.|..|.:.::....|...:.:::|||...|.:......|...|..:....::..|.|:...|
Mouse   423 LERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGK 487

  Fly   422 LAVGAIGHLANVP 434
            .||.|:|.|.::|
Mouse   488 PAVAALGDLTDLP 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C2NP_001261955.1 PqqL 22..417 CDD:223685 94/449 (21%)
Peptidase_M16 41..185 CDD:279066 36/150 (24%)
Peptidase_M16_C 190..364 CDD:282978 43/216 (20%)
PmpcaNP_775272.1 PqqL 64..503 CDD:223685 100/455 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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