DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C2 and pmpca

DIOPT Version :9

Sequence 1:NP_001261955.1 Gene:UQCR-C2 / 39846 FlyBaseID:FBgn0250814 Length:440 Species:Drosophila melanogaster
Sequence 2:NP_001007443.1 Gene:pmpca / 492801 ZFINID:ZDB-GENE-030131-5809 Length:517 Species:Danio rerio


Alignment Length:518 Identity:119/518 - (22%)
Similarity:208/518 - (40%) Gaps:99/518 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MACNASKTSLLRAIAKRGYATC---------------------PRPVGDLSAVN--------VKV 36
            ||.:.|:........:.|.|.|                     |:||  .::|:        :..
Zfish     1 MAAHMSRLRGWSRAQRYGIAVCRQYSSGSSYPNVSLSTPLPGIPKPV--FASVDGHEKYETKITT 63

  Fly    37 LENKLVVATADATLPVSRVSLVLGAGSRNESYDIQGASHLL-RLAGGLSTQNSTAFAIARNIQQV 100
            |||.|.:|:.:.......|.:::.:|||:|:....|.:|.| :|:...:.|..:...|...:::.
Zfish    64 LENGLKIASQNKFGQFCTVGILVNSGSRHEAKYPSGIAHFLEKLSFSSTAQFGSKGEILLTLEKH 128

  Fly   101 GGTLTTWGDRELVGYTVTTTADNAETGLRYLQD-LLQPAFKPWELVDNAKTVV----NQLNAVST 160
            ||.......|:...|.|:......:|.:..|.| :|||.... |.::.|:..|    ..||....
Zfish   129 GGICDCQTSRDTTMYAVSAEVKGLDTVVHLLSDAVLQPRLLD-EEIEMARMAVRFELEDLNMRPD 192

  Fly   161 EERAI-ELVHKAAFRNGLGNSIYSPRF----QLGKLSSESLLHYVAQTFAAGRAAVVGVGIDNNT 220
            .|..: |::|.||:|   ||::..|||    .:.|:..:.|..|:...:...|..:.||||::..
Zfish   193 PEPLLTEMIHAAAYR---GNTVGLPRFSPADNVEKIDKKLLHKYLQSYYCPERMVLAGVGIEHEQ 254

  Fly   221 LAGFAQ----TLQFPSGGSKAAS-----ANWYGGDAR--KDTS----GHRAVVAVA----GQGAA 266
            |...|:    .:|...|.||.|:     |.:.||..:  ||.|    |...:..:.    |..:.
Zfish   255 LVQCARKYLLNVQPVWGESKPANVDRSVAQYTGGIVKMVKDMSDVSLGPTPIPELTHIMIGLESC 319

  Fly   267 ASNHKEALAFAILEQALGAKAATKRGTSAGLFGEAVNCAGGVGA------------------SVK 313
            :...::.:.||:|...:|         ..|.|.     |||.|.                  :..
Zfish   320 SFLEEDFIPFAVLNMMMG---------GGGSFS-----AGGPGKGMFTRLYLNVLNRHHWMYNAT 370

  Fly   314 AVNASYSDAGLFGFVVSADSKDIGKTVEFLVRGL--KSASVSDKDVARGKALLKARIISRYSSDG 376
            :.:.||.|:||.....|||.:.:.:.||.:.|..  .:.:..:.::.|.|..||:.::....|..
Zfish   371 SYHHSYEDSGLLCIHASADPRQVREMVEIITREFIQMTGTAGEMELERAKTQLKSMLMMNLESRP 435

  Fly   377 GLIKEIGRQAALTRNVLEADALLGAIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDL 439
            .:.:::|||...|........|...|..::.|.::....|:..||.||.|:|.|..:|...|:
Zfish   436 VIFEDVGRQVLATGKRKLPHELCELISTVTASDIKRVTMKMLRSKPAVAALGDLTELPSYEDI 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C2NP_001261955.1 PqqL 22..417 CDD:223685 104/473 (22%)
Peptidase_M16 41..185 CDD:279066 37/150 (25%)
Peptidase_M16_C 190..364 CDD:282978 46/212 (22%)
pmpcaNP_001007443.1 PqqL 59..496 CDD:223685 108/454 (24%)
Peptidase_M16 69..218 CDD:279066 39/152 (26%)
Peptidase_M16_C 224..423 CDD:282978 46/212 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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