DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C2 and Pmpca

DIOPT Version :9

Sequence 1:NP_001261955.1 Gene:UQCR-C2 / 39846 FlyBaseID:FBgn0250814 Length:440 Species:Drosophila melanogaster
Sequence 2:XP_038960652.1 Gene:Pmpca / 296588 RGDID:727897 Length:538 Species:Rattus norvegicus


Alignment Length:468 Identity:103/468 - (22%)
Similarity:186/468 - (39%) Gaps:74/468 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PRPV------GDLSAVNVKVLENKLVVATADATLPVSRVSLVLGAGSRNESYDIQGASHLL-RLA 80
            |:|:      .:.....|..|:|.|.||:.:.......:.:::.:|||.|:..:.|.:|.| :||
  Rat    65 PKPIFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTLGILINSGSRYEAKYLSGIAHFLEKLA 129

  Fly    81 GGLSTQNSTAFAIARNIQQVGGTLTTWGDRELVGYTVTTTADNAETGLRYLQD-LLQPAFKPWEL 144
            ...:.:..:...|...:::.||.......|:...|.|:..:...:|.:..|.| :|.|.....|:
  Rat   130 FSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDEEI 194

  Fly   145 VDNAKTVVNQLNAVS----TEERAIELVHKAAFR-NGLGNSIYSPRFQLGKLSSESLLHYVAQTF 204
            ......|..:|..::    .|....|::|:|||| |.:|...:.|...:||:..|.|..|:...:
  Rat   195 EMTRMAVQFELEDLNMRPDPEPLLTEMIHEAAFRENTVGLHRFCPVENIGKIDREVLHSYLKNYY 259

  Fly   205 AAGRAAVVGVGIDNNTLAGFAQTLQF---PSGGSKAA------SANWYGG--DARKDTSG----- 253
            ...|..:.|||:::..|...|:....   |:.|:..|      .|.:.||  ...:|.|.     
  Rat   260 TPDRMVLAGVGVEHEHLVECARKYLLGVQPAWGAPGAVDVDSSVAQYTGGIIKVERDMSNVSLGP 324

  Fly   254 -------HRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGEAVNCAGGVGA- 310
                   |    .:.|..:.:...::.:.||:|...:|         ..|.|.     |||.|. 
  Rat   325 TPIPELTH----IMVGLESCSFLEEDFIPFAVLNMMMG---------GGGSFS-----AGGPGKG 371

  Fly   311 -----------------SVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRG--LKSASVSDKD 356
                             :..:.:.||.|.||.....|||.:.:.:.||.:.:.  |...:|...:
  Rat   372 MFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVE 436

  Fly   357 VARGKALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLGAIDGISQSQVQEAAKKVGSSK 421
            :.|.|..|.:.::....|...:.:::|||...|.:......|...|..:....::..|.|:...|
  Rat   437 LERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGK 501

  Fly   422 LAVGAIGHLANVP 434
            .||.|:|.|.::|
  Rat   502 PAVAALGDLTDLP 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C2NP_001261955.1 PqqL 22..417 CDD:223685 95/449 (21%)
Peptidase_M16 41..185 CDD:279066 35/150 (23%)
Peptidase_M16_C 190..364 CDD:282978 44/216 (20%)
PmpcaXP_038960652.1 PqqL 78..517 CDD:223685 101/455 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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