DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn12 and RPN12a

DIOPT Version :9

Sequence 1:NP_648904.1 Gene:Rpn12 / 39845 FlyBaseID:FBgn0028693 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_176633.1 Gene:RPN12a / 842760 AraportID:AT1G64520 Length:267 Species:Arabidopsis thaliana


Alignment Length:266 Identity:105/266 - (39%)
Similarity:151/266 - (56%) Gaps:5/266 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEV 65
            :..|...::...|.::::..||  |..||.||||.|.|...||....::.::.|:|.:||.:.|.
plant     5 LTEVSQQFERFKAAFARKDYNT--CSDLLSQLKVLLTKFTSLPPLFENSPNAAKELTIARDIYEH 67

  Fly    66 AVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELL 130
            ||..||.::|..||||...|||.||.|....|.:|..:..:||||||.||..||:::||||||||
plant    68 AVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQENLILGLNLLRLLVQNRIAEFHTELELL 132

  Fly   131 SVDVIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYD 195
            |...:: :..|:..:.|||..|||.||::..|:.|.|...|.||||||.:|:||||..|.||:||
plant   133 SSATLE-DPCIKHAVELEQSFMEGAYNRVLSARQTAPDATYVYFMDLLAKTIRDEIAGCSEKAYD 196

  Fly   196 KISAKDAAKRLNLRVPDEIKAFGAKR--QWKLEASGDYSFTDRSVKPKELLPSEELAEQVLSYAR 258
            .:|..||.:.|......|:..:....  :|:::.........:...|.:.:||.:|..|.|||||
plant   197 YVSISDARQMLLFSSDQELLTYVTDEHPEWEVKEGFVVFQKAKETAPCKEIPSLQLINQTLSYAR 261

  Fly   259 DLEMIV 264
            :||.||
plant   262 ELERIV 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn12NP_648904.1 CSN8_PSD8_EIF3K 119..230 CDD:287089 45/112 (40%)
RPN12aNP_176633.1 CSN8_PSD8_EIF3K 118..221 CDD:420155 45/103 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 103 1.000 Domainoid score I2255
eggNOG 1 0.900 - - E1_KOG3151
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37686
Inparanoid 1 1.050 174 1.000 Inparanoid score I1510
OMA 1 1.010 - - QHG53806
OrthoDB 1 1.010 - - D1183195at2759
OrthoFinder 1 1.000 - - FOG0003512
OrthoInspector 1 1.000 - - mtm1162
orthoMCL 1 0.900 - - OOG6_102164
Panther 1 1.100 - - LDO PTHR12387
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2884
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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