DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn12 and RPN12b

DIOPT Version :9

Sequence 1:NP_648904.1 Gene:Rpn12 / 39845 FlyBaseID:FBgn0028693 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_199019.2 Gene:RPN12b / 834209 AraportID:AT5G42040 Length:233 Species:Arabidopsis thaliana


Alignment Length:249 Identity:83/249 - (33%)
Similarity:126/249 - (50%) Gaps:22/249 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEVAVEHSVLSKDLLAFERYMA 84
            |..::..|..::.|.     ||:..|.:...|...||.|        .:|.::|..|.|    :.
plant     3 PQLMEVSQQFERFKA-----AFIIKDFDTCSSLLSQLKL--------FDHYLISLSLNA----LL 50

  Fly    85 QLKC--YYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILAL 147
            .|.|  ::......|..|..:..::|||||.||..||:::|||||.|||...:: |..|:..:.|
plant    51 LLTCALFFLCTRNRIPPSPQENLIMGLNLLRLLVQNRIAEFHTELGLLSSATLE-NPCIKHAVEL 114

  Fly   148 EQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKISAKDAAKRLNLRVPD 212
            ||..|||.||::..|:.|.|.|.|.||||||.:|:||||..|.||:||.:|..:..|.|......
plant   115 EQSFMEGAYNRVLSARQTAPDETYVYFMDLLAKTIRDEIAGCSEKAYDHLSISEGCKMLLFSSDQ 179

  Fly   213 EIKAFGAKR--QWKLEASGDYSFTDRSVKPKELLPSEELAEQVLSYARDLEMIV 264
            ::..:..:.  :|:::.........|...|.:.:||.:|..|.|||.|:||.|:
plant   180 QLLTYVNEEHPEWEVKDGLVVFQKTRETAPCKEIPSLQLINQTLSYTRELERIL 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn12NP_648904.1 CSN8_PSD8_EIF3K 119..230 CDD:287089 44/112 (39%)
RPN12bNP_199019.2 CSN8_PSD8_EIF3K 73..201 CDD:287089 52/128 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 103 1.000 Domainoid score I2255
eggNOG 1 0.900 - - E1_KOG3151
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 174 1.000 Inparanoid score I1510
OMA 1 1.010 - - QHG53806
OrthoDB 1 1.010 - - D1183195at2759
OrthoFinder 1 1.000 - - FOG0003512
OrthoInspector 1 1.000 - - mtm1162
orthoMCL 1 0.900 - - OOG6_102164
Panther 1 1.100 - - O PTHR12387
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2884
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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