DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn12 and PSMD8

DIOPT Version :10

Sequence 1:NP_648904.1 Gene:Rpn12 / 39845 FlyBaseID:FBgn0028693 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_002803.2 Gene:PSMD8 / 5714 HGNCID:9566 Length:350 Species:Homo sapiens


Alignment Length:259 Identity:130/259 - (50%)
Similarity:186/259 - (71%) Gaps:3/259 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEVAVEHSV 71
            :|::|..||:::.||..|||:.|.:||:.|:::.||||.|  .:.:|:||||||.:||:..:.|:
Human    94 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTG--TKLTKQQLILARDILEIGAQWSI 156

  Fly    72 LSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQ 136
            |.||:.:||||||||||||:||.:.:.||...::|||||||:|||.|||::||||||.|....||
Human   157 LRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQ 221

  Fly   137 HNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKISAKD 201
            .|.:|:..::||||:|||.|||:|.||..:|.|.|::|:|:||:|:||||..||||:|:||...:
Human   222 TNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTE 286

  Fly   202 AAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDRSVKPKE-LLPSEELAEQVLSYARDLEMIV 264
            |.:.|....|.::..:..||.|.|..:..|||..:..||:: .:||.|||:||:.|||.|||||
Human   287 ATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn12NP_648904.1 CSN8_PSD8_EIF3K 119..229 CDD:462954 52/109 (48%)
PSMD8NP_002803.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
CSN8_PSD8_EIF3K 201..315 CDD:462954 54/113 (48%)
Blue background indicates that the domain is not in the aligned region.

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