DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn12 and psmd8

DIOPT Version :9

Sequence 1:NP_648904.1 Gene:Rpn12 / 39845 FlyBaseID:FBgn0028693 Length:264 Species:Drosophila melanogaster
Sequence 2:XP_012823709.1 Gene:psmd8 / 448645 XenbaseID:XB-GENE-961854 Length:310 Species:Xenopus tropicalis


Alignment Length:265 Identity:134/265 - (50%)
Similarity:191/265 - (72%) Gaps:3/265 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEV 65
            :..:.::|::|.|||:|:.||..|||.:|.:||:||::..||||  .|.:.:|:||||||.:||:
 Frog    48 LRQLAAMYEQLKAEWAKKNPNLSKCGDVLGKLKLALLEQNFLPT--TDVKLTKQQLILARDILEI 110

  Fly    66 AVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELL 130
            ..:.|:|.||:.:||||||||||||:||...:.||..|::|||||||:|||.|||:|||||||.|
 Frog   111 GAQWSILKKDIPSFERYMAQLKCYYFDYKDELPESAYKHQLLGLNLLFLLSQNRVADFHTELERL 175

  Fly   131 SVDVIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYD 195
            ....||.|.:|:..::||||:|||.|||:|.||..:|.|.|::|:|:||:|:||||..||||:|.
 Frog   176 PAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIADCIEKAYG 240

  Fly   196 KISAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDRSVKPKEL-LPSEELAEQVLSYARD 259
            ||...:|.:.|....|.::..:..||.|.|..:.::||:.:...|:|: :||.|||:||:.|||.
 Frog   241 KILFNEATRILFFNTPKKMTEYAKKRGWVLGPNNNFSFSSQQQNPEEVTIPSTELAKQVIEYARQ 305

  Fly   260 LEMIV 264
            |||||
 Frog   306 LEMIV 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn12NP_648904.1 CSN8_PSD8_EIF3K 119..230 CDD:287089 53/110 (48%)
psmd8XP_012823709.1 CSN8_PSD8_EIF3K 161..276 CDD:370807 55/114 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 143 1.000 Domainoid score I4635
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 272 1.000 Inparanoid score I2928
OMA 1 1.010 - - QHG53806
OrthoDB 1 1.010 - - D1183195at2759
OrthoFinder 1 1.000 - - FOG0003512
OrthoInspector 1 1.000 - - otm47824
Panther 1 1.100 - - LDO PTHR12387
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2884
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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