| Sequence 1: | NP_001261954.1 | Gene: | Smn / 39844 | FlyBaseID: | FBgn0036641 | Length: | 226 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_071954.2 | Gene: | Smn1 / 64301 | RGDID: | 620755 | Length: | 288 | Species: | Rattus norvegicus |
| Alignment Length: | 290 | Identity: | 75/290 - (25%) |
|---|---|---|---|
| Similarity: | 115/290 - (39%) | Gaps: | 101/290 - (34%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 2 SDETNAAVWDDSLLVKTYDESVGLAREAL---------------ARRLADSTNKREEENAAAAEE 51
Fly 52 EAGEISATGGATSPEPVSFKVGDYARATY-VDGVDYEGAVVSINEEKGTCVLRYLGYENEQEVLL 115
Fly 116 VDLL-PSWGKRVRREQFLIAKKDEDEQLSRPKASAGSHSKTPKSSRRSRI--------------- 164
Fly 165 ----------------------------------SGGLVMPPMPPVPPMIVGQGDGAEQDFVAML 195
Fly 196 TAWYMSGYYTGLYQG----KKEASTTSGKK 221 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Smn | NP_001261954.1 | SMN | 2..215 | CDD:283622 | 72/282 (26%) |
| TUDOR | 68..122 | CDD:295375 | 21/55 (38%) | ||
| Smn1 | NP_071954.2 | P1 (binding site for GEMIN2). /evidence=ECO:0000250 | 10..41 | 7/17 (41%) | |
| SMN | 24..280 | CDD:399180 | 70/280 (25%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 54..87 | 8/32 (25%) | |||
| Required for interaction with RPP20/POP7. /evidence=ECO:0000250 | 94..204 | 26/112 (23%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 149..225 | 8/78 (10%) | |||
| P2 (binding site for SM B). /evidence=ECO:0000250 | 234..261 | 8/30 (27%) | |||
| Required for interaction with SYNCRIP. /evidence=ECO:0000250 | 273..288 | 7/16 (44%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C166346778 | |
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG4327 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 1 | 1.050 | 75 | 1.000 | Inparanoid score | I5177 |
| OMA | 1 | 1.010 | - | - | QHG47795 | |
| OrthoDB | 1 | 1.010 | - | - | D1316275at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0006496 | |
| OrthoInspector | 1 | 1.000 | - | - | oto97628 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_108123 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR13681 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X4739 | |
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 1 | 0.960 | - | - | ||
| 13 | 12.770 | |||||