Protein Alignment Smn and smndc1

DIOPT Version :9

• Sequence 1: NP_001261954.1
• Gene: Smn / 39844
• FlyBaseID: FBgn0036641
• Length: 226
• Species: Drosophila melanogaster
• Sequence 2: NP_997766.1
• Gene: smndc1 / 572679
• ZFINID: ZDB-GENE-030131-614
• Length: 237
• Species: Danio rerio
• Alignment Length: 147
• Identity: 35/147 - (23%)
• Similarity: 57/147 - (38%)
• Gaps: 32/147 - (21%)

  Fly    15 LVKTYDESVGLAREALARRLADSTNKREEENAAAAEEEAGEISATGGATSPEPVSFKVGDYARAT 79
            |.|...|.:.|.::.|..:.|:.|...:.....|...                 |::|||:..||
Zfish    35 LQKDLQEVIELTKDLLTSQPAEGTTSTKSSETVAPSH-----------------SWRVGDHCMAT 82

  Fly    80 Y-VDGVDYEGAVVSINEEKGTCVLRYLGYENEQEVLL--------------VDLLPSWGKRVRRE 129
            : .||..||..:..|:.|.||..:.:.||.|.:.:.|              :|..|...|.::.|
Zfish    83 WSQDGQVYEAEIEEIDNENGTAAITFAGYGNAEVMPLHMLKKVEEGRIRDEIDGKPKSKKELQAE 147

  Fly   130 QFLIAKKDEDEQLSRPK 146
            |....||...:::.|.|
Zfish   148 QREYKKKKAQKKVQRMK 164

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Smn	NP_001261954.1	SMN	2..215	CDD:283622	35/147 (24%)
		TUDOR	68..122	CDD:295375	20/68 (29%)
smndc1	NP_997766.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	52..73		3/37 (8%)
		TUDOR	76..124	CDD:119391	16/47 (34%)
		Nuclear localization signal. /evidence=ECO:0000255	142..160		5/17 (29%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	149..198		4/16 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D539238at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.010