Protein Alignment Smn and smndc1

DIOPT Version :9

• Sequence 1: NP_001261954.1
• Gene: Smn / 39844
• FlyBaseID: FBgn0036641
• Length: 226
• Species: Drosophila melanogaster
• Sequence 2: NP_001006857.1
• Gene: smndc1 / 448621
• XenbaseID: XB-GENE-491591
• Length: 238
• Species: Xenopus tropicalis
• Alignment Length: 180
• Identity: 38/180 - (21%)
• Similarity: 79/180 - (43%)
• Gaps: 49/180 - (27%)

  Fly    15 LVKTYDESVGLAREALARRLADSTNKREEENAAAAEEEAGEISATGGATSPEPVSFKVGDYARAT 79
            |.|...|.:.|.::.|:.:.:::           |::...::||:|..      |:|||:...|.
 Frog    35 LKKDLQEVIELTKDLLSSQPSET-----------ADDACDDMSASGSQ------SWKVGEKCMAV 82

  Fly    80 YV-DGVDYEGAVVSINEEKGTCVLRYLGYENEQEVLLVDLLP-SWGKRVR---------REQFLI 133
            :. ||..||..:..|:||.||..:.:.||.|.:...|::|.| ..|::.:         :::.:.
 Frog    83 WSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVEEGRKAKEDSGNLPMSKKEMIA 147

  Fly   134 AKKD--------------------EDEQLSRPKASAGSHSKTPKSS-RRS 162
            |:::                    ||:::...:.:..::||..|.. :||
 Frog   148 AQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNKAYSKNKKGQVKRS 197

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Smn	NP_001261954.1	SMN	2..215	CDD:283622	38/180 (21%)
		TUDOR	68..122	CDD:295375	20/55 (36%)
smndc1	NP_001006857.1	SMN	<66..>124	CDD:310529	22/63 (35%)
		Nuclear localization signal. /evidence=ECO:0000255	142..160		1/17 (6%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D539238at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010