DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smn and Smndc1

DIOPT Version :9

Sequence 1:NP_001261954.1 Gene:Smn / 39844 FlyBaseID:FBgn0036641 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001020571.1 Gene:Smndc1 / 287768 RGDID:1309151 Length:238 Species:Rattus norvegicus


Alignment Length:181 Identity:36/181 - (19%)
Similarity:74/181 - (40%) Gaps:51/181 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LVKTYDESVGLAREALARRLADSTNKREEENAAAAEEEAGEISATGGATSPEPV-SFKVGDYARA 78
            |.|...|.:.|.::.|:.:.:::                  ::::....|.:|. |:||||...|
  Rat    35 LKKDLQEVIELTKDLLSTQPSET------------------LTSSDSFASTQPTHSWKVGDKCMA 81

  Fly    79 TY-VDGVDYEGAVVSINEEKGTCVLRYLGYENEQEVLLVDLLP----------SWGKRVRREQFL 132
            .: .||..||..:..|:||.||..:.:..|.|.:...|::|.|          |..|.:.:::.:
  Rat    82 VWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMI 146

  Fly   133 IAKKD--------------------EDEQLSRPKASAGSHSKTPKSS-RRS 162
            ..:::                    ||:::...:.:..::||..|.. :||
  Rat   147 AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRS 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmnNP_001261954.1 SMN 2..215 CDD:283622 36/181 (20%)
TUDOR 68..122 CDD:295375 20/65 (31%)
Smndc1NP_001020571.1 Tudor_SPF30 73..128 CDD:410470 19/54 (35%)
Nuclear localization signal. /evidence=ECO:0000255 142..160 0/17 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D539238at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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