DRSC/TRiP Functional Genomics Resources

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Protein Alignment nxf2 and Nxf7

DIOPT Version :10

Sequence 1:NP_524111.3 Gene:nxf2 / 39843 FlyBaseID:FBgn0036640 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_001032293.1 Gene:Nxf7 / 501621 RGDID:1566170 Length:614 Species:Rattus norvegicus


Alignment Length:576 Identity:130/576 - (22%)
Similarity:228/576 - (39%) Gaps:124/576 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 NMLHKIFSPLDVEIDLEVDGARIDTNNMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRL 350
            |.:|.:.|.....:|...|..||         :|.......|:.:.|.|::.:.| .|:...|.:
  Rat   130 NSVHSLCSVPFTPVDFHCDKYRI---------QFFVQDSSIAYALKDVSYKISSE-DFEKIPIFV 184

  Fly   351 DPTLSNFYPCYYKYINTEHVFLVRNCF--DQIAHLVNNCNLEMTIPTGDRIFRYYLRMNVSTVKQ 413
            :|:::              .:.|:|.|  :|:..|    .|.|.       .||.:..:...:|:
  Rat   185 NPSVA--------------PYSVQNRFTREQMEQL----KLAMK-------KRYDISQHALCLKK 224

  Fly   414 HHVDPEECIQKAVSQCYVAQNRMLNLERFHSRECLKDVM--VSLSSPKILTYVLSVASRKFMTTC 476
            ...||:          .:..|..:.|.|   |.|:...:  :....||:|:              
  Rat   225 LRFDPD----------LMNHNIDMILNR---RSCMTATLQIIQEDFPKLLS-------------- 262

  Fly   477 SEIRLCHNKVLVLDGA-HVLGMMGCLRAVDLSHNWVQDLSSIHSLGNLPLKSLVLHGNKLCRNYR 540
              :.|..||:..||.. .|:.....|:.::||.|.::....:..:..|.|:.|.|.||.||..:.
  Rat   263 --LNLSSNKLFQLDSLFDVVKKAPKLKILNLSKNMLRTAWELEKIRGLKLEQLWLEGNPLCSTFP 325

  Fly   541 LPSEYVRAVKEVFPQLTTLDGVDLQTNPGQSLQKN---------FLCDTGAYELVGAFLENYLRE 596
            ..|.||.|:.|.||||:.|||..|..:.|..:::.         |.........|..||::|...
  Rat   326 DHSSYVSAILEYFPQLSCLDGRKLPLSTGMDIEEPQLMKPRKAIFKGSEAIKNQVQQFLQDYYLI 390

  Fly   597 FENDEFRHNLYKYYSENSIFTLTCNYNVVQNHQTPKILQRLSKYNRHARNLRN-KDYSKASDGVF 660
            ::::| |..|...|.|.:.|:||..:|     .:...|..:..|.:..|:::| |::......:.
  Rat   391 YDSEE-RQGLLSIYHEQACFSLTIPFN-----PSGPDLSSMCGYFKDERDVKNPKEFHIQRQLLK 449

  Fly   661 FGCTYIVEILLQLPRVTHDFHSLQTDVMHYNGKGAVIYVAGLLRDEPPSTRNGHGSKTDIGGVLL 725
            :....||..|..||:..|.|:|.|.|:.....|.....|:||.::...|::.          .:.
  Rat   450 YTKEDIVGYLRTLPKTLHVFNSFQVDICFQMEKTLCFSVSGLFKEVEGSSQE----------CIR 504

  Fly   726 GFSRQFVVTFDEANLGLGKRARRLKIANERLHITNPSKTAIRNAFSVNFPDPSERQAEEDSLDVK 790
            .|.|.|:..|:.::        .|.|.|::|.:.|||...|:.||:::.|           ....
  Rat   505 AFMRIFIAVFESSS--------NLCIVNDQLFVRNPSPDEIQGAFAISSP-----------TSCS 550

  Fly   791 DHKLLLFQE----------VTGLISTWVTSIVEEADWDFERALKLFIQKNADHEIP 836
            ..||:|.||          .:|:...|....:::..||:.||.::|.......:||
  Rat   551 SFKLVLSQEQQRMVQAFSTQSGMKLEWSQKCLDDNKWDYTRAAEVFTMLQTKSKIP 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nxf2NP_524111.3 PPP1R42 <206..284 CDD:455733
leucine-rich repeat 434..474 CDD:275382 8/41 (20%)
leucine-rich repeat 475..500 CDD:275382 6/25 (24%)
leucine-rich repeat 501..524 CDD:275382 4/22 (18%)
leucine-rich repeat 525..555 CDD:275382 13/29 (45%)
TAP_C 779..841 CDD:197882 14/68 (21%)
Nxf7NP_001032293.1 Tap-RNA_bind 112..191 CDD:462696 15/84 (18%)
leucine-rich repeat 217..259 CDD:275382 8/54 (15%)
LRR <258..>345 CDD:443914 30/102 (29%)
leucine-rich repeat 260..285 CDD:275382 7/40 (18%)
leucine-rich repeat 286..309 CDD:275382 4/22 (18%)
leucine-rich repeat 310..340 CDD:275382 13/29 (45%)
NTF2_like 380..531 CDD:471850 41/174 (24%)
TAP_C 549..611 CDD:197882 14/58 (24%)
Blue background indicates that the domain is not in the aligned region.

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