DRSC/TRiP Functional Genomics Resources

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Protein Alignment nxf2 and ssp2

DIOPT Version :10

Sequence 1:NP_524111.3 Gene:nxf2 / 39843 FlyBaseID:FBgn0036640 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_648672.1 Gene:ssp2 / 39540 FlyBaseID:FBgn0036389 Length:982 Species:Drosophila melanogaster


Alignment Length:111 Identity:27/111 - (24%)
Similarity:37/111 - (33%) Gaps:39/111 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   706 EPPSTRNGHGSKTDIGG----VLLGFSRQFVVTFDEANLGLGKRARRLKIANERLHITNPSKTAI 766
            :.|.....|.|....||    :|...||    .:|:.||             ..:|.:|.|.|:.
  Fly   530 DTPVLNQSHSSSNSSGGGGERLLSRRSR----LYDDVNL-------------SAMHGSNGSSTST 577

  Fly   767 RNA-FSVN----------FPDPSERQAEED-------SLDVKDHKL 794
            .:| |.|.          .|||....|||.       .:|...:||
  Fly   578 NSASFIVQRRDMPQVEQPAPDPDPEPAEEPPKSQVTAEIDPASYKL 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nxf2NP_524111.3 PPP1R42 <206..284 CDD:455733
leucine-rich repeat 434..474 CDD:275382
leucine-rich repeat 475..500 CDD:275382
leucine-rich repeat 501..524 CDD:275382
leucine-rich repeat 525..555 CDD:275382
TAP_C 779..841 CDD:197882 6/23 (26%)
ssp2NP_648672.1 PHA03247 <676..965 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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